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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rpy 27Z Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3rpy 27ZCyclin-dependent kinase 2 2.7.11.22 0.958
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.867
3r9o Z71Cyclin-dependent kinase 2 2.7.11.22 0.838
3r9h Z67Cyclin-dependent kinase 2 2.7.11.22 0.827
3rzb 02ZCyclin-dependent kinase 2 2.7.11.22 0.810
2bts U32Cyclin-dependent kinase 2 2.7.11.22 0.787
2iw8 4SPCyclin-dependent kinase 2 2.7.11.22 0.784
3qxp X64Cyclin-dependent kinase 2 2.7.11.22 0.777
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.777
3rk5 07ZCyclin-dependent kinase 2 2.7.11.22 0.764
4bgh 3I6Cyclin-dependent kinase 2 2.7.11.22 0.758
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.756
3qtu X44Cyclin-dependent kinase 2 2.7.11.22 0.749
1oit HDTCyclin-dependent kinase 2 2.7.11.22 0.739
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.727
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.722
4eok 4SPCyclin-dependent kinase 2 2.7.11.22 0.721
4eor 4SPCyclin-dependent kinase 2 2.7.11.22 0.718
1ykr 628Cyclin-dependent kinase 2 2.7.11.22 0.717
4acm 7YGCyclin-dependent kinase 2 2.7.11.22 0.717
2fvd LIACyclin-dependent kinase 2 2.7.11.22 0.716
1urw I1PCyclin-dependent kinase 2 2.7.11.22 0.711
2c6i DT1Cyclin-dependent kinase 2 2.7.11.22 0.709
3qu0 X40Cyclin-dependent kinase 2 2.7.11.22 0.705
2wxv WXVCyclin-dependent kinase 2 2.7.11.22 0.702
2c6t DT5Cyclin-dependent kinase 2 2.7.11.22 0.683
2uzo C62Cyclin-dependent kinase 2 2.7.11.22 0.683
3s0o 50ZCyclin-dependent kinase 2 2.7.11.22 0.679
4fkp LS5Cyclin-dependent kinase 2 2.7.11.22 0.679
2c6k DT2Cyclin-dependent kinase 2 2.7.11.22 0.673
1h1q 2A6Cyclin-dependent kinase 2 2.7.11.22 0.672
3w33 W19Epidermal growth factor receptor 2.7.10.1 0.672
2jko BIJFocal adhesion kinase 1 2.7.10.2 0.666
2wms ZYSSerine/threonine-protein kinase Chk1 2.7.11.1 0.665
2wip P49Cyclin-dependent kinase 2 2.7.11.22 0.664
1h1s 4SPCyclin-dependent kinase 2 2.7.11.22 0.662
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.662
1oi9 N20Cyclin-dependent kinase 2 2.7.11.22 0.661
1ogu ST8Cyclin-dependent kinase 2 2.7.11.22 0.659
3unj 0BXCyclin-dependent kinase 2 2.7.11.22 0.654
2w05 FRTCyclin-dependent kinase 2 2.7.11.22 0.652
1fvv 107Cyclin-dependent kinase 2 2.7.11.22 0.651
3unk 0BYCyclin-dependent kinase 2 2.7.11.22 0.651
2c5n CK8Cyclin-dependent kinase 2 2.7.11.22 0.650