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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rlr 3RR Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3rlr 3RRHeat shock protein HSP 90-alpha / 1.047
3rlq 3RQHeat shock protein HSP 90-alpha / 0.912
4fcr 0TMHeat shock protein HSP 90-alpha / 0.889
3rlp 3RPHeat shock protein HSP 90-alpha / 0.876
3wha WHAHeat shock protein HSP 90-alpha / 0.829
4fcq 2N6Heat shock protein HSP 90-alpha / 0.807
3r4n FU5Heat shock protein HSP 90-alpha / 0.778
2wi6 ZZ6Heat shock protein HSP 90-alpha / 0.774
3b28 B2XHeat shock protein HSP 90-alpha / 0.716
3omu IBDHeat shock protein 83 / 0.716
2xhr C0PHeat shock protein HSP 90-alpha / 0.691
3r4p FU7Heat shock protein HSP 90-alpha / 0.686
2wi4 ZZ4Heat shock protein HSP 90-alpha / 0.684
2qfo A13Heat shock protein HSP 90-alpha / 0.667
2qg0 A94Heat shock protein HSP 90-alpha / 0.665
2xjg XJGHeat shock protein HSP 90-alpha / 0.657