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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rkr NAP Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3rkr NAPUncharacterized protein / 0.924
2vcz VC3Hematopoietic prostaglandin D synthase / 0.679
1oaa NAPSepiapterin reductase 1.1.1.153 0.669
2yeg XQGHeat shock protein HSP 90-alpha / 0.668
1c3x 8IGPurine nucleoside phosphorylase 2.4.2.1 0.660
4loc BTNPyruvate carboxylase / 0.659
4mfe BTNPyruvate carboxylase / 0.657
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.655
2gyw OBIAcetylcholinesterase 3.1.1.7 0.654