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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rkb 12Z Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3rkb 12ZCyclin-dependent kinase 2 2.7.11.22 0.960
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.862
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.796
3qtq X35Cyclin-dependent kinase 2 2.7.11.22 0.793
3qtr X36Cyclin-dependent kinase 2 2.7.11.22 0.769
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.764
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.759
3qtw X3ACyclin-dependent kinase 2 2.7.11.22 0.757
3r8z Z63Cyclin-dependent kinase 2 2.7.11.22 0.754
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3rah O1ZCyclin-dependent kinase 2 2.7.11.22 0.743
3s1h 56ZCyclin-dependent kinase 2 2.7.11.22 0.743
3r9n Z68Cyclin-dependent kinase 2 2.7.11.22 0.737
3rk5 07ZCyclin-dependent kinase 2 2.7.11.22 0.736
3qqk X02Cyclin-dependent kinase 2 2.7.11.22 0.731
2b55 D31Cyclin-dependent kinase 2 2.7.11.22 0.723
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 0.714
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.704
1v1k 3FPCyclin-dependent kinase 2 2.7.11.22 0.703
3qtx X43Cyclin-dependent kinase 2 2.7.11.22 0.702
3r9h Z67Cyclin-dependent kinase 2 2.7.11.22 0.700
3r8v Z62Cyclin-dependent kinase 2 2.7.11.22 0.698
4ez3 0S0Cyclin-dependent kinase 2 2.7.11.22 0.691
3s0o 50ZCyclin-dependent kinase 2 2.7.11.22 0.688
2c6t DT5Cyclin-dependent kinase 2 2.7.11.22 0.683
2bts U32Cyclin-dependent kinase 2 2.7.11.22 0.673
1h1q 2A6Cyclin-dependent kinase 2 2.7.11.22 0.672
2izs BRQCasein kinase I isoform gamma-3 2.7.11.1 0.670
1y91 CT9Cyclin-dependent kinase 2 2.7.11.22 0.669
1w8c N69Cyclin-dependent kinase 2 2.7.11.22 0.667
3r8u Z31Cyclin-dependent kinase 2 2.7.11.22 0.666
5dr9 SKEAurora kinase A 2.7.11.1 0.661
1h1r 6CPCyclin-dependent kinase 2 2.7.11.22 0.660
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.660
4e5f 0N7Polymerase acidic protein / 0.660
2wip P49Cyclin-dependent kinase 2 2.7.11.22 0.656
4bcq TJFCyclin-dependent kinase 2 2.7.11.22 0.656
2vts LZCCyclin-dependent kinase 2 2.7.11.22 0.654
2vtl LZ5Cyclin-dependent kinase 2 2.7.11.22 0.653
2vtp LZ9Cyclin-dependent kinase 2 2.7.11.22 0.650
4lyn 1YGCyclin-dependent kinase 2 2.7.11.22 0.650