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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rjc 06Z Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.943
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 0.817
3qqk X02Cyclin-dependent kinase 2 2.7.11.22 0.805
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.803
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.798
3sqq 99ZCyclin-dependent kinase 2 2.7.11.22 0.794
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.786
3r8z Z63Cyclin-dependent kinase 2 2.7.11.22 0.778
3ral 04ZCyclin-dependent kinase 2 2.7.11.22 0.777
3rk5 07ZCyclin-dependent kinase 2 2.7.11.22 0.776
3qtx X43Cyclin-dependent kinase 2 2.7.11.22 0.773
3qtw X3ACyclin-dependent kinase 2 2.7.11.22 0.762
3qtr X36Cyclin-dependent kinase 2 2.7.11.22 0.760
3rkb 12ZCyclin-dependent kinase 2 2.7.11.22 0.759
3qtq X35Cyclin-dependent kinase 2 2.7.11.22 0.756
3rpv 26ZCyclin-dependent kinase 2 2.7.11.22 0.735
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.727
3qtu X44Cyclin-dependent kinase 2 2.7.11.22 0.727
3qxp X64Cyclin-dependent kinase 2 2.7.11.22 0.726
3qu0 X40Cyclin-dependent kinase 2 2.7.11.22 0.712
3r9h Z67Cyclin-dependent kinase 2 2.7.11.22 0.701
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.685
3rmf 20ZCyclin-dependent kinase 2 2.7.11.22 0.685
3rpr 25ZCyclin-dependent kinase 2 2.7.11.22 0.682
1pxj CK2Cyclin-dependent kinase 2 2.7.11.22 0.678
2vtt LZDCyclin-dependent kinase 2 2.7.11.22 0.678
3s0o 50ZCyclin-dependent kinase 2 2.7.11.22 0.673
1v1k 3FPCyclin-dependent kinase 2 2.7.11.22 0.670
3r8v Z62Cyclin-dependent kinase 2 2.7.11.22 0.670
2iw6 QQ2Cyclin-dependent kinase 2 2.7.11.22 0.669
2vtq LZACyclin-dependent kinase 2 2.7.11.22 0.665
3rpy 27ZCyclin-dependent kinase 2 2.7.11.22 0.662
4e5f 0N7Polymerase acidic protein / 0.660
4iva 1J5Tyrosine-protein kinase JAK2 / 0.652
3r8u Z31Cyclin-dependent kinase 2 2.7.11.22 0.651