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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rfa SAM Dual-specificity RNA methyltransferase RlmN

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3rfa SAMDual-specificity RNA methyltransferase RlmN / 0.972
4k39 SAMAnaerobic sulfatase-maturating enzyme 1.8.98 0.734
4k38 SAMAnaerobic sulfatase-maturating enzyme 1.8.98 0.733
4k36 SAMAnaerobic sulfatase-maturating enzyme 1.8.98 0.727
4k37 SAMAnaerobic sulfatase-maturating enzyme 1.8.98 0.710
2fb3 5ADGTP 3',8-cyclase 4.1.99.18 0.670
5dwq SFGHistone-arginine methyltransferase CARM1 / 0.664
2h39 ADQADP-glucose phosphorylase / 0.659
4nye ADPPhosphoribosylaminoimidazole-succinocarboxamide synthase 6.3.2.6 0.653
2fb2 SAMGTP 3',8-cyclase 4.1.99.18 0.652