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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rf7 NAD Iron-containing alcohol dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3rf7 NADIron-containing alcohol dehydrogenase / 1.277
5br4 NADLactaldehyde reductase 1.1.1.77 0.813
1sg6 NADPentafunctional AROM polypeptide / 0.705
1nve NADPentafunctional AROM polypeptide / 0.699
3qbd NAD3-dehydroquinate synthase 4.2.3.4 0.689
1xag NAD3-dehydroquinate synthase / 0.685
4j43 NADUncharacterized protein / 0.682
1rrm APRLactaldehyde reductase 1.1.1.77 0.668
3jzd NADMaleylacetate reductase / 0.665
1jq5 NADGlycerol dehydrogenase 1.1.1.6 0.660
1uxj NADMalate dehydrogenase / 0.659
1xaj NAD3-dehydroquinate synthase / 0.653
4p53 NAI2-epi-5-epi-valiolone synthase / 0.653