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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rdq DTB Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3rdq DTBStreptavidin / 1.015
3rdo BTNStreptavidin / 0.965
1mk5 BTNStreptavidin / 0.958
3ry2 BTNStreptavidin / 0.949
2izf BTNStreptavidin / 0.943
2y3f BTNStreptavidin / 0.942
2izh BTNStreptavidin / 0.941
4yvb BTNStreptavidin / 0.940
2izi BTNStreptavidin / 0.936
3wyq BTNStreptavidin / 0.936
3wyp BSOStreptavidin / 0.929
4dne DTBStreptavidin / 0.929
1nqm BTNStreptavidin / 0.925
2rtg BTNStreptavidin / 0.920
1n43 BTNStreptavidin / 0.918
1swe BTNStreptavidin / 0.916
2izg BTNStreptavidin / 0.906
2rtf BTNStreptavidin / 0.905
4gda BTNStreptavidin / 0.898
2izj BTNStreptavidin / 0.894
1ndj BTNStreptavidin / 0.889
1luq BTNStreptavidin / 0.887
3wzn BTNStreptavidin / 0.879
2rte BTNStreptavidin / 0.876
1df8 BTNStreptavidin / 0.868
2zsc BTNTamavidin2 / 0.859
2izl IMIStreptavidin / 0.846
4z28 BTNHoefavidin / 0.841
1lcw SHMStreptavidin / 0.840
4gd9 BTNStreptavidin / 0.836
1mep BTNStreptavidin / 0.827
2uyw BTNAvd protein / 0.823
2c4i BTNAvidin / 0.820
3ew2 BTNHypothetical conserved protein / 0.818
1nc9 IMIStreptavidin / 0.814
1stp BTNStreptavidin / 0.810
1swp BTNStreptavidin / 0.802
1rxj BNIStreptavidin / 0.793
2rtr IMIStreptavidin / 0.789
1swt BTNStreptavidin / 0.784
2fhl BNIAvidin-related protein 4/5 / 0.779
3t2w BTNAvidin/streptavidin / 0.761
1swg BTNStreptavidin / 0.757
2rto IMIStreptavidin / 0.752
1swn BTNStreptavidin / 0.747
2rtm IMIStreptavidin / 0.743
4bj8 BTNAvidin / 0.743
1n9m BTNStreptavidin / 0.736
2rtn IMIStreptavidin / 0.727
1rxh BNIStreptavidin / 0.725
4bcs BTNAvidin-related protein 4/5 / 0.722
1swd BTNStreptavidin / 0.721
2avi BTNAvidin / 0.715
2uz2 BTNAvd protein / 0.710
2rtd BTNStreptavidin / 0.708
1swr BTNStreptavidin / 0.704
3vhi VHIAvidin / 0.698
2rtl IMIStreptavidin / 0.693
4bx7 B4FStreptavidin / 0.693
4ggz BTNBll1558 protein / 0.693
2rtp IMIStreptavidin / 0.689
1y52 BTNAvidin-related protein 4/5 / 0.686
3vgw NVZAvidin / 0.683
1sre HABStreptavidin / 0.665
2rtk GLLStreptavidin / 0.655