Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rdo BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3rdo BTNStreptavidin / 1.017
2y3f BTNStreptavidin / 0.971
2izf BTNStreptavidin / 0.970
1mk5 BTNStreptavidin / 0.968
3ry2 BTNStreptavidin / 0.968
2rtg BTNStreptavidin / 0.965
3rdq DTBStreptavidin / 0.965
3wyq BTNStreptavidin / 0.965
2izh BTNStreptavidin / 0.952
2izg BTNStreptavidin / 0.950
1swe BTNStreptavidin / 0.949
2izi BTNStreptavidin / 0.949
4yvb BTNStreptavidin / 0.945
1nqm BTNStreptavidin / 0.943
2izj BTNStreptavidin / 0.937
2rtd BTNStreptavidin / 0.933
2rtf BTNStreptavidin / 0.933
4gda BTNStreptavidin / 0.930
1n43 BTNStreptavidin / 0.925
3wyp BSOStreptavidin / 0.922
2rte BTNStreptavidin / 0.921
1luq BTNStreptavidin / 0.914
3wzn BTNStreptavidin / 0.911
2zsc BTNTamavidin2 / 0.908
1i9h BNIStreptavidin / 0.907
4dne DTBStreptavidin / 0.903
1df8 BTNStreptavidin / 0.896
4gd9 BTNStreptavidin / 0.895
4bx7 B4FStreptavidin / 0.879
4z28 BTNHoefavidin / 0.874
1n9m BTNStreptavidin / 0.863
1mep BTNStreptavidin / 0.854
1swp BTNStreptavidin / 0.851
3ew2 BTNHypothetical conserved protein / 0.846
1swr BTNStreptavidin / 0.843
1ndj BTNStreptavidin / 0.842
1stp BTNStreptavidin / 0.839
2uyw BTNAvd protein / 0.837
2c4i BTNAvidin / 0.835
1swg BTNStreptavidin / 0.826
1swn BTNStreptavidin / 0.822
1rxj BNIStreptavidin / 0.821
1swt BTNStreptavidin / 0.821
2rtr IMIStreptavidin / 0.817
1lcw SHMStreptavidin / 0.813
1rxh BNIStreptavidin / 0.805
1y52 BTNAvidin-related protein 4/5 / 0.803
3t2w BTNAvidin/streptavidin / 0.803
2rtp IMIStreptavidin / 0.802
1swp BTQStreptavidin / 0.801
2fhl BNIAvidin-related protein 4/5 / 0.800
2fhn BNIAvidin-related protein 4/5 / 0.798
2rtn IMIStreptavidin / 0.789
4bj8 BTNAvidin / 0.788
2rtq IMIStreptavidin / 0.787
2rto IMIStreptavidin / 0.783
4ggz BTNBll1558 protein / 0.768
2rtm IMIStreptavidin / 0.766
1swd BTNStreptavidin / 0.754
2uz2 BTNAvd protein / 0.749
3vhi VHIAvidin / 0.746
3vgw NVZAvidin / 0.743
2rtl IMIStreptavidin / 0.719
1avd BTNAvidin / 0.713
1ij8 BNIAvidin / 0.704
4bcs BTNAvidin-related protein 4/5 / 0.681
3vhh VHHAvidin / 0.658