Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3rah O1Z Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3rah O1ZCyclin-dependent kinase 2 2.7.11.22 1.035
3r9n Z68Cyclin-dependent kinase 2 2.7.11.22 0.927
3r8u Z31Cyclin-dependent kinase 2 2.7.11.22 0.845
3rpr 25ZCyclin-dependent kinase 2 2.7.11.22 0.787
3r8v Z62Cyclin-dependent kinase 2 2.7.11.22 0.777
3qts X46Cyclin-dependent kinase 2 2.7.11.22 0.750
3rkb 12ZCyclin-dependent kinase 2 2.7.11.22 0.743
3s00 Z60Cyclin-dependent kinase 2 2.7.11.22 0.734
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.694
2fvd LIACyclin-dependent kinase 2 2.7.11.22 0.682