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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3r96 ACO MccE protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3r96 ACOMccE protein / 1.444
3r95 ACOMccE protein / 1.391
1s7n COAAcetyl transferase / 0.989
2vzz SCAPutative succinyl-CoA transferase Rv0802c 2.8.3 0.761
1ozp ACOMycothiol acetyltransferase 2.3.1.189 0.754
1s7l COAAcetyl transferase / 0.746
1cjw COTSerotonin N-acetyltransferase / 0.742
4b5o ACOAlpha-tubulin N-acetyltransferase 1 / 0.722
2jdd ACOProbable acetyltransferase / 0.721
4ri1 ACOUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase 2.3.1.202 0.720
2bsw CAOProbable acetyltransferase / 0.714
2jdc CAOProbable acetyltransferase / 0.713
4if5 ACOAlpha-tubulin N-acetyltransferase 1 / 0.713
4u9y COAAlpha-tubulin N-acetyltransferase 1 / 0.711
4jwp ACOGCN5-related N-acetyltransferase / 0.707
2x7b COAN-alpha-acetyltransferase 2.3.1 0.705
3sxn COAN-acetyltransferase Eis / 0.704
3to6 LYS_CMCHistone acetyltransferase ESA1 / 0.701
1fy7 COAHistone acetyltransferase ESA1 / 0.700
3mgd ACOPredicted acetyltransferase / 0.700
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.697
1kuv CA5Serotonin N-acetyltransferase / 0.696
3vwd ACOAlpha-tubulin N-acetyltransferase 1 / 0.695
5kgh ACOPredicted acetyltransferase / 0.692
1p0h ACOMycothiol acetyltransferase 2.3.1.189 0.691
3te4 ACODopamine N-acetyltransferase / 0.690
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.690
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 0.689
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.689
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.688
1bo4 COAAminoglycoside-(3)-N-acetyltransferase / 0.687
2fiw ACOGCN5-related N-acetyltransferase:Aminotransferase, class-II / 0.686
1mj9 COAHistone acetyltransferase ESA1 / 0.684
1kuy COTSerotonin N-acetyltransferase / 0.683
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.683
4r3k COAN-alpha-acetyltransferase 2.3.1 0.683
5kf8 ACOPredicted acetyltransferase / 0.682
1ib1 COTSerotonin N-acetyltransferase / 0.681
1l0c COTSerotonin N-acetyltransferase / 0.678
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.678
2cns ACORibosomal-protein-alanine acetyltransferase / 0.678
5kgj ACOPredicted acetyltransferase / 0.678
1mja COAHistone acetyltransferase ESA1 / 0.677
1pua COAHAT A1 / 0.674
1qsr ACOHAT A1 / 0.670
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.670
1j4j ACOAcetyltransferase 2.3.1 0.669
1m1d LYXHAT A1 / 0.668
1xvt COAL-carnitine CoA-transferase / 0.668
2b3v ACODiamine acetyltransferase 1 / 0.668
3exn ACOProbable acetyltransferase / 0.668
5kf1 ACOPredicted acetyltransferase / 0.668
5kf9 ACOPredicted acetyltransferase / 0.668
5kgp ACOPredicted acetyltransferase / 0.667
1wwz ACOUncharacterized protein / 0.666
2cy2 ACOProbable acetyltransferase / 0.666
2r8v ACOAmino-acid acetyltransferase / 0.666
3f8k COAUncharacterized protein / 0.666
1cm0 COAHistone acetyltransferase KAT2B 2.3.1.48 0.665
1ghe ACOAcetyltransferase 2.3.1 0.665
1pu9 COAHAT A1 / 0.665
2zfn ACOHistone acetyltransferase RTT109 2.3.1.48 0.662
3cz7 ACOHistone acetyltransferase RTT109 2.3.1.48 0.662
5kf2 ACOPredicted acetyltransferase / 0.662
2ft0 ACOdTDP-fucosamine acetyltransferase / 0.661
1xa4 COAL-carnitine CoA-transferase / 0.652