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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3r8u Z31 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3r8u Z31Cyclin-dependent kinase 2 2.7.11.22 1.008
3r8v Z62Cyclin-dependent kinase 2 2.7.11.22 0.849
3rah O1ZCyclin-dependent kinase 2 2.7.11.22 0.845
3rpr 25ZCyclin-dependent kinase 2 2.7.11.22 0.827
3r9n Z68Cyclin-dependent kinase 2 2.7.11.22 0.815
3s0o 50ZCyclin-dependent kinase 2 2.7.11.22 0.755
3qts X46Cyclin-dependent kinase 2 2.7.11.22 0.751
1w8c N69Cyclin-dependent kinase 2 2.7.11.22 0.694
3s00 Z60Cyclin-dependent kinase 2 2.7.11.22 0.686
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.685
3rzb 02ZCyclin-dependent kinase 2 2.7.11.22 0.675
3r8z Z63Cyclin-dependent kinase 2 2.7.11.22 0.669
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.668
5dt0 SKEAurora kinase A 2.7.11.1 0.668
3rkb 12ZCyclin-dependent kinase 2 2.7.11.22 0.666
5dr6 SKEAurora kinase A 2.7.11.1 0.661
2wms ZYSSerine/threonine-protein kinase Chk1 2.7.11.1 0.657
1h0v UN4Cyclin-dependent kinase 2 2.7.11.22 0.656
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.651
1pxj CK2Cyclin-dependent kinase 2 2.7.11.22 0.650