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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3r3b 4CO 4-hydroxybenzoyl-CoA thioesterase 3.1.2.23

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3r3b 4CO4-hydroxybenzoyl-CoA thioesterase 3.1.2.23 1.485
3r3f 4CO4-hydroxybenzoyl-CoA thioesterase 3.1.2.23 1.087
3r37 4CO4-hydroxybenzoyl-CoA thioesterase 3.1.2.23 1.044
3r35 4CO4-hydroxybenzoyl-CoA thioesterase 3.1.2.23 1.033
1q4t 4CO4-hydroxybenzoyl-CoA thioesterase 3.1.2.23 1.020
1q4u 4CA4-hydroxybenzoyl-CoA thioesterase 3.1.2.23 0.996
3r32 4CO4-hydroxybenzoyl-CoA thioesterase 3.1.2.23 0.953
3r3d 4CO4-hydroxybenzoyl-CoA thioesterase 3.1.2.23 0.905
3r34 COA4-hydroxybenzoyl-CoA thioesterase 3.1.2.23 0.867
3tea 4CO4-hydroxybenzoyl-CoA thioesterase 3.1.2.23 0.850
3r3c 4CO4-hydroxybenzoyl-CoA thioesterase 3.1.2.23 0.802
1wlv COAPhenylacetic acid degradation protein PaaI / 0.725
3bgc LJHGag-Pol polyprotein 3.4.23.16 0.655
1yli COAUncharacterized acyl-CoA thioester hydrolase HI_0827 3.1.2 0.654
3lbe COAUncharacterized protein / 0.654
5bnt NAPAspartate-semialdehyde dehydrogenase 1.2.1.11 0.651