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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3r28 XA0 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3r28 XA0Cyclin-dependent kinase 2 2.7.11.22 0.980
3qx4 X4BCyclin-dependent kinase 2 2.7.11.22 0.893
3qzi X72Cyclin-dependent kinase 2 2.7.11.22 0.866
3qwj X6ACyclin-dependent kinase 2 2.7.11.22 0.853
3r1s X73Cyclin-dependent kinase 2 2.7.11.22 0.840
3r1q X75Cyclin-dependent kinase 2 2.7.11.22 0.832
3qwk X62Cyclin-dependent kinase 2 2.7.11.22 0.830
3rm6 18ZCyclin-dependent kinase 2 2.7.11.22 0.808
3r7u X96Cyclin-dependent kinase 2 2.7.11.22 0.794
3r7v Z02Cyclin-dependent kinase 2 2.7.11.22 0.794
3r6x X84Cyclin-dependent kinase 2 2.7.11.22 0.793
3r7i X9ICyclin-dependent kinase 2 2.7.11.22 0.793
3rai X85Cyclin-dependent kinase 2 2.7.11.22 0.772
3qxo X65Cyclin-dependent kinase 2 2.7.11.22 0.761
3qzh X69Cyclin-dependent kinase 2 2.7.11.22 0.761
3r73 X87Cyclin-dependent kinase 2 2.7.11.22 0.759
3rpo 24ZCyclin-dependent kinase 2 2.7.11.22 0.759
3qx2 X63Cyclin-dependent kinase 2 2.7.11.22 0.756
3rm7 19ZCyclin-dependent kinase 2 2.7.11.22 0.752
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3r7e X88Cyclin-dependent kinase 2 2.7.11.22 0.743
3qqf X07Cyclin-dependent kinase 2 2.7.11.22 0.686
3r8z Z63Cyclin-dependent kinase 2 2.7.11.22 0.678
3r1y X76Cyclin-dependent kinase 2 2.7.11.22 0.669
3r7y Z04Cyclin-dependent kinase 2 2.7.11.22 0.666
3qtq X35Cyclin-dependent kinase 2 2.7.11.22 0.663
4e5f 0N7Polymerase acidic protein / 0.660
3qtu X44Cyclin-dependent kinase 2 2.7.11.22 0.656
4lyn 1YGCyclin-dependent kinase 2 2.7.11.22 0.655
3qqk X02Cyclin-dependent kinase 2 2.7.11.22 0.653