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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3r0i C0K 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3r0i C0K1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.947
3anm SYD1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.789
3anl SYC1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.765
3zhy FM61-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.730
4kp7 1UQ1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic 1.1.1.267 0.674
3zhz FM71-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.668
1maw ATPTryptophan--tRNA ligase 6.1.1.2 0.656
2egh FOM1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.656
4jda A9SAbscisic acid receptor PYL3 / 0.653
3uow XMPGMP synthase [glutamine-hydrolyzing] / 0.651
4h0d ZZ7Metallo-beta-lactamase type 2 / 0.650