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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3r04 UNQ Serine/threonine-protein kinase pim-1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3r04 UNQSerine/threonine-protein kinase pim-1 2.7.11.1 1.101
3r02 UNMSerine/threonine-protein kinase pim-1 2.7.11.1 0.768
3cy3 JN5Serine/threonine-protein kinase pim-1 2.7.11.1 0.738
2xiz XIZSerine/threonine-protein kinase pim-1 2.7.11.1 0.722
4mbl 26LSerine/threonine-protein kinase pim-1 2.7.11.1 0.707
2xj1 XJ1Serine/threonine-protein kinase pim-1 2.7.11.1 0.702
3jy0 LYGSerine/threonine-protein kinase pim-1 2.7.11.1 0.701
3vbq 0F5Serine/threonine-protein kinase pim-1 2.7.11.1 0.700
3dcv 55ESerine/threonine-protein kinase pim-1 2.7.11.1 0.695
2xj2 985Serine/threonine-protein kinase pim-1 2.7.11.1 0.694
4eny J19Serine/threonine-protein kinase pim-1 2.7.11.1 0.690
4fsr HKCSerine/threonine-protein kinase Chk1 2.7.11.1 0.658
5dgz L20Serine/threonine-protein kinase pim-1 2.7.11.1 0.657