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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3r02 UNM Serine/threonine-protein kinase pim-1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3r02 UNMSerine/threonine-protein kinase pim-1 2.7.11.1 1.149
3r04 UNQSerine/threonine-protein kinase pim-1 2.7.11.1 0.768
4dtk 7LISerine/threonine-protein kinase pim-1 2.7.11.1 0.713
4mbl 26LSerine/threonine-protein kinase pim-1 2.7.11.1 0.713
4bzo 676Serine/threonine-protein kinase pim-1 2.7.11.1 0.693
3cy2 MB9Serine/threonine-protein kinase pim-1 2.7.11.1 0.684
2xj2 985Serine/threonine-protein kinase pim-1 2.7.11.1 0.670
1rx5 DDFDihydrofolate reductase 1.5.1.3 0.665
3mb6 01ICasein kinase II subunit alpha 2.7.11.1 0.662
1yhs STUSerine/threonine-protein kinase pim-1 2.7.11.1 0.658
3bgq VX2Serine/threonine-protein kinase pim-1 2.7.11.1 0.656
2vag V25Dual specificity protein kinase CLK1 2.7.12.1 0.654
2ym6 YM6Serine/threonine-protein kinase Chk1 2.7.11.1 0.654
3mb7 14ICasein kinase II subunit alpha 2.7.11.1 0.651