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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qwc 98P Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qwc 98PProthrombin 3.4.21.5 0.943
3p17 99PProthrombin 3.4.21.5 0.880
2zdv 37UProthrombin 3.4.21.5 0.879
2zff 53UProthrombin 3.4.21.5 0.878
2zda 32UProthrombin 3.4.21.5 0.876
3qtv 06PProthrombin 3.4.21.5 0.870
2zf0 51UProthrombin 3.4.21.5 0.866
2zc9 22UProthrombin 3.4.21.5 0.861
3dhk 23UProthrombin 3.4.21.5 0.839
2zhq 27UProthrombin 3.4.21.5 0.838
2zgx 29UProthrombin 3.4.21.5 0.805
2zfp 19UProthrombin 3.4.21.5 0.776
2znk 31UProthrombin 3.4.21.5 0.775
3eq0 2TSProthrombin 3.4.21.5 0.769
2zi2 24UProthrombin 3.4.21.5 0.764
3dux 64UProthrombin 3.4.21.5 0.764
1riw OSCProthrombin 3.4.21.5 0.760
1k22 MELProthrombin 3.4.21.5 0.751
3utu 1TSProthrombin 3.4.21.5 0.750
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1nt1 T76Prothrombin 3.4.21.5 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1ae8 AZLProthrombin 3.4.21.5 0.738
2zg0 50UProthrombin 3.4.21.5 0.738
4bam MM9Prothrombin 3.4.21.5 0.737
4ban M6SProthrombin 3.4.21.5 0.737
4bah MELProthrombin 3.4.21.5 0.736
1k21 IGNProthrombin 3.4.21.5 0.730
1ta2 176Prothrombin 3.4.21.5 0.726
2ziq 26UProthrombin 3.4.21.5 0.723
5cmx 0G6Prothrombin 3.4.21.5 0.723
2zfq 45UProthrombin 3.4.21.5 0.721
4bak M67Prothrombin 3.4.21.5 0.718
1ta6 177Prothrombin 3.4.21.5 0.717
2anm CDOProthrombin 3.4.21.5 0.717
4bao MVFProthrombin 3.4.21.5 0.717
2zgb 21UProthrombin 3.4.21.5 0.714
1xm1 GAHProthrombin 3.4.21.5 0.712
2zhf 49UProthrombin 3.4.21.5 0.712
1ypl RA8Prothrombin 3.4.21.5 0.711
1sl3 170Prothrombin 3.4.21.5 0.709
1mue CDDProthrombin 3.4.21.5 0.703
1zrb 062Prothrombin 3.4.21.5 0.701
1ypm RA4Prothrombin 3.4.21.5 0.698
3f68 91UProthrombin 3.4.21.5 0.697
2zfr 46UProthrombin 3.4.21.5 0.690
1mu8 CDBProthrombin 3.4.21.5 0.688
2bxt C2DProthrombin 3.4.21.5 0.684
4baq M4ZProthrombin 3.4.21.5 0.683
3c1k T15Prothrombin 3.4.21.5 0.680
1nm6 L86Prothrombin 3.4.21.5 0.678
1afe ALZProthrombin 3.4.21.5 0.673
1o0d 163Prothrombin 3.4.21.5 0.662
4e5f 0N7Polymerase acidic protein / 0.660
1wqv PSMCoagulation factor VII 3.4.21.21 0.659
1d9i 00PProthrombin 3.4.21.5 0.655
1nzq 162Prothrombin 3.4.21.5 0.652
1vja 7INUrokinase-type plasminogen activator 3.4.21.73 0.652
3biu 10UProthrombin 3.4.21.5 0.652