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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qu0 X40 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qu0 X40Cyclin-dependent kinase 2 2.7.11.22 0.954
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 0.842
3rak 03ZCyclin-dependent kinase 2 2.7.11.22 0.799
3sqq 99ZCyclin-dependent kinase 2 2.7.11.22 0.788
3qtu X44Cyclin-dependent kinase 2 2.7.11.22 0.787
3qxp X64Cyclin-dependent kinase 2 2.7.11.22 0.787
3rmf 20ZCyclin-dependent kinase 2 2.7.11.22 0.779
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.776
3s1h 56ZCyclin-dependent kinase 2 2.7.11.22 0.767
3rpv 26ZCyclin-dependent kinase 2 2.7.11.22 0.760
3qtw X3ACyclin-dependent kinase 2 2.7.11.22 0.759
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.751
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.751
3rk5 07ZCyclin-dependent kinase 2 2.7.11.22 0.740
3r9h Z67Cyclin-dependent kinase 2 2.7.11.22 0.735
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.712
4acm 7YGCyclin-dependent kinase 2 2.7.11.22 0.707
3rpy 27ZCyclin-dependent kinase 2 2.7.11.22 0.705
3qtx X43Cyclin-dependent kinase 2 2.7.11.22 0.689
3ral 04ZCyclin-dependent kinase 2 2.7.11.22 0.679
3r9o Z71Cyclin-dependent kinase 2 2.7.11.22 0.676
2c6l DT4Cyclin-dependent kinase 2 2.7.11.22 0.675
2iw8 4SPCyclin-dependent kinase 2 2.7.11.22 0.668
3rzb 02ZCyclin-dependent kinase 2 2.7.11.22 0.663
2c6i DT1Cyclin-dependent kinase 2 2.7.11.22 0.662
4eor 4SPCyclin-dependent kinase 2 2.7.11.22 0.661
2c6t DT5Cyclin-dependent kinase 2 2.7.11.22 0.657