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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qtz X42 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 1.053
3rak 03ZCyclin-dependent kinase 2 2.7.11.22 0.935
3rpv 26ZCyclin-dependent kinase 2 2.7.11.22 0.904
3qtu X44Cyclin-dependent kinase 2 2.7.11.22 0.875
3qxp X64Cyclin-dependent kinase 2 2.7.11.22 0.875
3sqq 99ZCyclin-dependent kinase 2 2.7.11.22 0.870
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.858
3s1h 56ZCyclin-dependent kinase 2 2.7.11.22 0.844
3qu0 X40Cyclin-dependent kinase 2 2.7.11.22 0.842
3qqk X02Cyclin-dependent kinase 2 2.7.11.22 0.824
3qtx X43Cyclin-dependent kinase 2 2.7.11.22 0.823
3rmf 20ZCyclin-dependent kinase 2 2.7.11.22 0.821
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.817
3r9h Z67Cyclin-dependent kinase 2 2.7.11.22 0.816
3qtr X36Cyclin-dependent kinase 2 2.7.11.22 0.800
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.774
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.763
3r9o Z71Cyclin-dependent kinase 2 2.7.11.22 0.762
3rk5 07ZCyclin-dependent kinase 2 2.7.11.22 0.756
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.753
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.751
2w06 FRVCyclin-dependent kinase 2 2.7.11.22 0.747
3rkb 12ZCyclin-dependent kinase 2 2.7.11.22 0.714
4acm 7YGCyclin-dependent kinase 2 2.7.11.22 0.694
2xmy CDKCyclin-dependent kinase 2 2.7.11.22 0.693
2c6l DT4Cyclin-dependent kinase 2 2.7.11.22 0.690
4fkp LS5Cyclin-dependent kinase 2 2.7.11.22 0.689
3rpr 25ZCyclin-dependent kinase 2 2.7.11.22 0.686
3ral 04ZCyclin-dependent kinase 2 2.7.11.22 0.681
3r8z Z63Cyclin-dependent kinase 2 2.7.11.22 0.677
3s0o 50ZCyclin-dependent kinase 2 2.7.11.22 0.675
3qtw X3ACyclin-dependent kinase 2 2.7.11.22 0.672
2wms ZYSSerine/threonine-protein kinase Chk1 2.7.11.1 0.669
1h0v UN4Cyclin-dependent kinase 2 2.7.11.22 0.660
2c6i DT1Cyclin-dependent kinase 2 2.7.11.22 0.659
1v1k 3FPCyclin-dependent kinase 2 2.7.11.22 0.658
2fvd LIACyclin-dependent kinase 2 2.7.11.22 0.655
5dt0 SKEAurora kinase A 2.7.11.1 0.655
1w8c N69Cyclin-dependent kinase 2 2.7.11.22 0.654
2c6m DT5Cyclin-dependent kinase 2 2.7.11.22 0.652
4lyn 1YGCyclin-dependent kinase 2 2.7.11.22 0.651