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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qtv 06P Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qtv 06PProthrombin 3.4.21.5 0.900
2zff 53UProthrombin 3.4.21.5 0.887
3qwc 98PProthrombin 3.4.21.5 0.870
2zdv 37UProthrombin 3.4.21.5 0.858
2zc9 22UProthrombin 3.4.21.5 0.857
2zf0 51UProthrombin 3.4.21.5 0.851
3p17 99PProthrombin 3.4.21.5 0.849
2zda 32UProthrombin 3.4.21.5 0.848
3dhk 23UProthrombin 3.4.21.5 0.838
3qto 10PProthrombin 3.4.21.5 0.820
1ta2 176Prothrombin 3.4.21.5 0.762
1riw OSCProthrombin 3.4.21.5 0.759
3dux 64UProthrombin 3.4.21.5 0.756
1ae8 AZLProthrombin 3.4.21.5 0.755
3eq0 2TSProthrombin 3.4.21.5 0.751
2zfp 19UProthrombin 3.4.21.5 0.749
2zgx 29UProthrombin 3.4.21.5 0.746
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2zhq 27UProthrombin 3.4.21.5 0.742
1zrb 062Prothrombin 3.4.21.5 0.738
1ta6 177Prothrombin 3.4.21.5 0.732
5cmx 0G6Prothrombin 3.4.21.5 0.730
2zg0 50UProthrombin 3.4.21.5 0.728
2znk 31UProthrombin 3.4.21.5 0.727
1ypl RA8Prothrombin 3.4.21.5 0.722
1k21 IGNProthrombin 3.4.21.5 0.716
3utu 1TSProthrombin 3.4.21.5 0.715
2zgb 21UProthrombin 3.4.21.5 0.713
2zfq 45UProthrombin 3.4.21.5 0.711
1k22 MELProthrombin 3.4.21.5 0.706
1nt1 T76Prothrombin 3.4.21.5 0.699
3f68 91UProthrombin 3.4.21.5 0.697
2zi2 24UProthrombin 3.4.21.5 0.695
4ban M6SProthrombin 3.4.21.5 0.693
4bah MELProthrombin 3.4.21.5 0.692
4bak M67Prothrombin 3.4.21.5 0.689
4bam MM9Prothrombin 3.4.21.5 0.688
4baq M4ZProthrombin 3.4.21.5 0.685
2ziq 26UProthrombin 3.4.21.5 0.684
2zhf 49UProthrombin 3.4.21.5 0.682
2anm CDOProthrombin 3.4.21.5 0.673
4bao MVFProthrombin 3.4.21.5 0.673
2gde SN3Prothrombin 3.4.21.5 0.672
2zfr 46UProthrombin 3.4.21.5 0.665
1xm1 GAHProthrombin 3.4.21.5 0.661
4e5f 0N7Polymerase acidic protein / 0.660
1w13 SM1Urokinase-type plasminogen activator 3.4.21.73 0.657
2a2x NA9Prothrombin 3.4.21.5 0.657
1sl3 170Prothrombin 3.4.21.5 0.652
1nzq 162Prothrombin 3.4.21.5 0.650