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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qtt ANP Pantothenate synthetase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qtt ANPPantothenate synthetase / 1.073
2a84 ATPPantothenate synthetase 6.3.2.1 0.780
3iod A6DPantothenate synthetase 6.3.2.1 0.729
1n2g APCPantothenate synthetase 6.3.2.1 0.727
1n2e APCPantothenate synthetase 6.3.2.1 0.718
3iob A4DPantothenate synthetase 6.3.2.1 0.718
3ioc A5DPantothenate synthetase 6.3.2.1 0.714
1i6k TYMTryptophan--tRNA ligase 6.1.1.2 0.700
2x3f APCPantothenate synthetase / 0.696
4pxz CLRP2Y purinoceptor 12 / 0.680
4lv8 ADPRhoptry protein 5 C / 0.664
4eak ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.663
3kt3 TYMTryptophan--tRNA ligase, cytoplasmic 6.1.1.2 0.662
3zxi TYATyrosine--tRNA ligase, mitochondrial 6.1.1.1 0.659
3qcz ANPDihydrofolate synthase/folylpolyglutamate synthase / 0.657
4wso NADProbable nicotinate-nucleotide adenylyltransferase / 0.651