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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qtq X35 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qtq X35Cyclin-dependent kinase 2 2.7.11.22 0.922
3r8z Z63Cyclin-dependent kinase 2 2.7.11.22 0.850
3rk9 09ZCyclin-dependent kinase 2 2.7.11.22 0.841
3rkb 12ZCyclin-dependent kinase 2 2.7.11.22 0.793
3rk7 08ZCyclin-dependent kinase 2 2.7.11.22 0.783
3qtw X3ACyclin-dependent kinase 2 2.7.11.22 0.779
3rjc 06ZCyclin-dependent kinase 2 2.7.11.22 0.756
3s1h 56ZCyclin-dependent kinase 2 2.7.11.22 0.748
3sqq 99ZCyclin-dependent kinase 2 2.7.11.22 0.740
3ral 04ZCyclin-dependent kinase 2 2.7.11.22 0.736
3o0g 3O0Cyclin-dependent-like kinase 5 2.7.11.1 0.727
3rk5 07ZCyclin-dependent kinase 2 2.7.11.22 0.726
3qxp X64Cyclin-dependent kinase 2 2.7.11.22 0.721
3rak 03ZCyclin-dependent kinase 2 2.7.11.22 0.720
3rni 21ZCyclin-dependent kinase 2 2.7.11.22 0.713
3r9d X6BCyclin-dependent kinase 2 2.7.11.22 0.708
3s0o 50ZCyclin-dependent kinase 2 2.7.11.22 0.707
3r8v Z62Cyclin-dependent kinase 2 2.7.11.22 0.704
3rmf 20ZCyclin-dependent kinase 2 2.7.11.22 0.701
3r9h Z67Cyclin-dependent kinase 2 2.7.11.22 0.700
3qtr X36Cyclin-dependent kinase 2 2.7.11.22 0.698
3rpv 26ZCyclin-dependent kinase 2 2.7.11.22 0.693
2iw6 QQ2Cyclin-dependent kinase 2 2.7.11.22 0.679
4lyn 1YGCyclin-dependent kinase 2 2.7.11.22 0.671
3qtu X44Cyclin-dependent kinase 2 2.7.11.22 0.666
3r28 XA0Cyclin-dependent kinase 2 2.7.11.22 0.663
3qtx X43Cyclin-dependent kinase 2 2.7.11.22 0.661
2bts U32Cyclin-dependent kinase 2 2.7.11.22 0.658
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.658
1ke7 LS3Cyclin-dependent kinase 2 2.7.11.22 0.656
1h0v UN4Cyclin-dependent kinase 2 2.7.11.22 0.654
3qrt X14Cyclin-dependent kinase 2 2.7.11.22 0.653
2fvd LIACyclin-dependent kinase 2 2.7.11.22 0.652
3qwj X6ACyclin-dependent kinase 2 2.7.11.22 0.651
3qx2 X63Cyclin-dependent kinase 2 2.7.11.22 0.651
3r1y X76Cyclin-dependent kinase 2 2.7.11.22 0.650
3r71 X86Cyclin-dependent kinase 2 2.7.11.22 0.650