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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qto 10P Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qto 10PProthrombin 3.4.21.5 0.914
3p17 99PProthrombin 3.4.21.5 0.881
2zff 53UProthrombin 3.4.21.5 0.826
2zdv 37UProthrombin 3.4.21.5 0.822
3qtv 06PProthrombin 3.4.21.5 0.820
2zc9 22UProthrombin 3.4.21.5 0.806
2zf0 51UProthrombin 3.4.21.5 0.801
1ta2 176Prothrombin 3.4.21.5 0.798
3dhk 23UProthrombin 3.4.21.5 0.785
2zg0 50UProthrombin 3.4.21.5 0.767
2zhq 27UProthrombin 3.4.21.5 0.757
2zgx 29UProthrombin 3.4.21.5 0.753
2zda 32UProthrombin 3.4.21.5 0.750
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
2znk 31UProthrombin 3.4.21.5 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3dux 64UProthrombin 3.4.21.5 0.738
2zfp 19UProthrombin 3.4.21.5 0.731
1ae8 AZLProthrombin 3.4.21.5 0.730
1ta6 177Prothrombin 3.4.21.5 0.725
2zi2 24UProthrombin 3.4.21.5 0.724
1riw OSCProthrombin 3.4.21.5 0.723
2zhf 49UProthrombin 3.4.21.5 0.723
1nt1 T76Prothrombin 3.4.21.5 0.722
4ban M6SProthrombin 3.4.21.5 0.719
5cmx 0G6Prothrombin 3.4.21.5 0.719
1ypl RA8Prothrombin 3.4.21.5 0.716
2anm CDOProthrombin 3.4.21.5 0.713
1zrb 062Prothrombin 3.4.21.5 0.708
2zgb 21UProthrombin 3.4.21.5 0.708
2zfq 45UProthrombin 3.4.21.5 0.705
4bam MM9Prothrombin 3.4.21.5 0.704
4bak M67Prothrombin 3.4.21.5 0.701
3utu 1TSProthrombin 3.4.21.5 0.692
4bah MELProthrombin 3.4.21.5 0.689
2gde SN3Prothrombin 3.4.21.5 0.685
1k22 MELProthrombin 3.4.21.5 0.684
4baq M4ZProthrombin 3.4.21.5 0.684
2a2x NA9Prothrombin 3.4.21.5 0.681
4bao MVFProthrombin 3.4.21.5 0.668
1nzq 162Prothrombin 3.4.21.5 0.663
1k21 IGNProthrombin 3.4.21.5 0.662
4e5f 0N7Polymerase acidic protein / 0.660
3c1k T15Prothrombin 3.4.21.5 0.659
2zfr 46UProthrombin 3.4.21.5 0.658
2ziq 26UProthrombin 3.4.21.5 0.655
3f68 91UProthrombin 3.4.21.5 0.655
2zhe 13UProthrombin 3.4.21.5 0.654