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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qrt X14 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qrt X14Cyclin-dependent kinase 2 2.7.11.22 1.044
3r8l Z30Cyclin-dependent kinase 2 2.7.11.22 0.789
3r8p Z46Cyclin-dependent kinase 2 2.7.11.22 0.771
4fkg 4CKCyclin-dependent kinase 2 2.7.11.22 0.750
3lfq A28Cyclin-dependent kinase 2 2.7.11.22 0.740
3qql X03Cyclin-dependent kinase 2 2.7.11.22 0.737
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.735
1vyz N5BCyclin-dependent kinase 2 2.7.11.22 0.729
4fkv 61KCyclin-dependent kinase 2 2.7.11.22 0.720
4fkq 42KCyclin-dependent kinase 2 2.7.11.22 0.716
4ek6 10KCyclin-dependent kinase 2 2.7.11.22 0.713
4fki 09KCyclin-dependent kinase 2 2.7.11.22 0.713
4fkw 62KCyclin-dependent kinase 2 2.7.11.22 0.698
4bgh 3I6Cyclin-dependent kinase 2 2.7.11.22 0.696
3ezr EZRCyclin-dependent kinase 2 2.7.11.22 0.692
4fkp LS5Cyclin-dependent kinase 2 2.7.11.22 0.691
4fkt 48KCyclin-dependent kinase 2 2.7.11.22 0.685
3say OFTGlycogen synthase kinase-3 beta 2.7.11.26 0.684
1ke7 LS3Cyclin-dependent kinase 2 2.7.11.22 0.680
1ke5 LS1Cyclin-dependent kinase 2 2.7.11.22 0.677
2hxl 422Serine/threonine-protein kinase Chk1 2.7.11.1 0.677
2qkr IXMCdc2-like CDK2/CDC28 like protein kinase / 0.675
3lfn A27Cyclin-dependent kinase 2 2.7.11.22 0.674
1vyw 292Cyclin-dependent kinase 2 2.7.11.22 0.673
1ykr 628Cyclin-dependent kinase 2 2.7.11.22 0.671
1p2a 5BNCyclin-dependent kinase 2 2.7.11.22 0.669
3r8z Z63Cyclin-dependent kinase 2 2.7.11.22 0.669
1q41 IXMGlycogen synthase kinase-3 beta 2.7.11.26 0.668
3pj8 404Cyclin-dependent kinase 2 2.7.11.22 0.668
4fks 46KCyclin-dependent kinase 2 2.7.11.22 0.668
3ezv EZVCyclin-dependent kinase 2 2.7.11.22 0.666
4fkj 11KCyclin-dependent kinase 2 2.7.11.22 0.666
3ig7 EFPCyclin-dependent kinase 2 2.7.11.22 0.665
1ke9 LS5Cyclin-dependent kinase 2 2.7.11.22 0.662
2wxv WXVCyclin-dependent kinase 2 2.7.11.22 0.660
2c3k ABOSerine/threonine-protein kinase Chk1 2.7.11.1 0.658
2r64 740Cyclin-dependent kinase 2 2.7.11.22 0.658
2vtq LZACyclin-dependent kinase 2 2.7.11.22 0.656
3le6 2BZCyclin-dependent kinase 2 2.7.11.22 0.656
1fvt 106Cyclin-dependent kinase 2 2.7.11.22 0.655
2vtj LZ4Cyclin-dependent kinase 2 2.7.11.22 0.654
2gni M77cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.653
3qtq X35Cyclin-dependent kinase 2 2.7.11.22 0.653
3l9n L9NcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.650