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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qqg X06 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qqg X06Cyclin-dependent kinase 2 2.7.11.22 0.955
3qqh X0ACyclin-dependent kinase 2 2.7.11.22 0.863
3qzg X67Cyclin-dependent kinase 2 2.7.11.22 0.835
3pxy JWSCyclin-dependent kinase 2 2.7.11.22 0.818
3ql8 X01Cyclin-dependent kinase 2 2.7.11.22 0.806
3qzf X66Cyclin-dependent kinase 2 2.7.11.22 0.753
3fz1 B98Cyclin-dependent kinase 2 2.7.11.22 0.687
3lfq A28Cyclin-dependent kinase 2 2.7.11.22 0.667
2hk5 1BMTyrosine-protein kinase HCK 2.7.10.2 0.663
1pmv 537Mitogen-activated protein kinase 10 2.7.11.24 0.662
3q9z TXQCasein kinase II subunit alpha 2.7.11.1 0.658
2zdt 46CMitogen-activated protein kinase 10 2.7.11.24 0.651