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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qpj N4I Gag-Pol polyprotein 3.4.23.16

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qpj N4IGag-Pol polyprotein 3.4.23.16 1.418
3qro NK9Gag-Pol polyprotein 3.4.23.16 1.240
3qrs NK8Gag-Pol polyprotein 3.4.23.16 1.219
3qbf JHGGag-Pol polyprotein 3.4.23.16 1.129
2qnn QN1Gag-Pol polyprotein 3.4.23.16 1.105
3qrm NK7Gag-Pol polyprotein 3.4.23.16 1.096
2pwr G4GGag-Pol polyprotein 3.4.23.16 1.046
2qnp QN2Gag-Pol polyprotein 3.4.23.16 0.974
2r38 G4GGag-Pol polyprotein 3.4.23.16 0.931
2pqz G0GGag-Pol polyprotein 3.4.23.16 0.924
2r3w G3GGag-Pol polyprotein 3.4.23.16 0.921
2r3t G4GGag-Pol polyprotein 3.4.23.16 0.918
2r43 G3GGag-Pol polyprotein 3.4.23.16 0.913
3ckt YDPGag-Pol polyprotein 3.4.23.16 0.904
2pwc G3GGag-Pol polyprotein 3.4.23.16 0.898
3qp0 NI8Gag-Pol polyprotein 3.4.23.16 0.741
3qn8 NI7Gag-Pol polyprotein 3.4.23.16 0.726
1mrw K57Gag-Pol polyprotein 3.4.23.16 0.719
2qnq QN3Gag-Pol polyprotein 3.4.23.16 0.716
1b6p PI7Gag-Pol polyprotein 3.4.23.16 0.714
1mtr PI6Gag-Pol polyprotein 3.4.23.16 0.713
1npv L27Gag-Pol polyprotein 3.4.23.16 0.711
4djo MK5Pol polyprotein / 0.694
4gb2 0LQGag-Pol polyprotein 2.7.7.49 0.685
1iiq 0ZRGag-Pol polyprotein 3.4.23.16 0.683
3oqf S51Renin 3.4.23.15 0.677
4djq M86Pol polyprotein / 0.670
4njs G08Protease / 0.669
2oah QINBeta-secretase 1 3.4.23.46 0.668
1d4j MSCGag-Pol polyprotein 3.4.23.16 0.667
1pro A88Gag-Pol polyprotein / 0.665
3bgb LJGGag-Pol polyprotein 3.4.23.16 0.663
1g35 AHFGag-Pol polyprotein 3.4.23.16 0.661
1wbk 568Pol protein / 0.659
2i0a MUIProtease / 0.659
3qih NI7Gag-Pol polyprotein 3.4.23.16 0.659
1d4h BEHGag-Pol polyprotein 3.4.23.16 0.657
2z4o 065Gag-Pol polyprotein 3.4.23.16 0.656
1ec1 BEEGag-Pol polyprotein 3.4.23.16 0.655
1wbm BLLPol protein / 0.655
2fdp FRPBeta-secretase 1 3.4.23.46 0.653
3qaa G04Gag-Pol polyprotein 3.4.23.16 0.653
3gi4 K60Gag-Pol polyprotein / 0.650