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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ql8 X01 Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ql8 X01Cyclin-dependent kinase 2 2.7.11.22 0.835
3qqg X06Cyclin-dependent kinase 2 2.7.11.22 0.806
3qzf X66Cyclin-dependent kinase 2 2.7.11.22 0.801
3qzg X67Cyclin-dependent kinase 2 2.7.11.22 0.796
3qqh X0ACyclin-dependent kinase 2 2.7.11.22 0.745
4e5i 0N9Polymerase acidic protein / 0.744
3pxy JWSCyclin-dependent kinase 2 2.7.11.22 0.736
3lfq A28Cyclin-dependent kinase 2 2.7.11.22 0.700
3lfs A07Cyclin-dependent kinase 2 2.7.11.22 0.692
2b52 D42Cyclin-dependent kinase 2 2.7.11.22 0.687
1pxo CK7Cyclin-dependent kinase 2 2.7.11.22 0.670
2r64 740Cyclin-dependent kinase 2 2.7.11.22 0.670
3ezr EZRCyclin-dependent kinase 2 2.7.11.22 0.670
3q3b 55EGlycogen synthase kinase-3 beta 2.7.11.26 0.667
2vth LZ2Cyclin-dependent kinase 2 2.7.11.22 0.666
3tiz 3TICyclin-dependent kinase 2 2.7.11.22 0.662
1rej B1LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.661
3le6 2BZCyclin-dependent kinase 2 2.7.11.22 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4fkj 11KCyclin-dependent kinase 2 2.7.11.22 0.659
4e5l DBHPolymerase acidic protein / 0.655
2r3r 6SCCyclin-dependent kinase 2 2.7.11.22 0.654
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.654
3lfn A27Cyclin-dependent kinase 2 2.7.11.22 0.654
4bgh 3I6Cyclin-dependent kinase 2 2.7.11.22 0.654
1vyz N5BCyclin-dependent kinase 2 2.7.11.22 0.652
3qud N3FMitogen-activated protein kinase 14 / 0.652
1oiq HDUCyclin-dependent kinase 2 2.7.11.22 0.650
4fkg 4CKCyclin-dependent kinase 2 2.7.11.22 0.650