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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qkz NAP Aldose reductase-related protein 1 1.1.1.21

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qkz NAPAldose reductase-related protein 1 1.1.1.21 1.470
3q67 NAPAldose reductase 1.1.1.21 1.280
2j8t NAPAldose reductase 1.1.1.21 1.274
2pev NDPAldose reductase 1.1.1.21 1.264
1z8a NAPAldose reductase 1.1.1.21 1.262
2pf8 NDPAldose reductase 1.1.1.21 1.261
1x98 NAPAldose reductase 1.1.1.21 1.242
1ah4 NAPAldose reductase 1.1.1.21 1.210
1ads NAPAldose reductase 1.1.1.21 1.205
2acq NAPAldose reductase 1.1.1.21 1.198
3v36 NAPAldose reductase 1.1.1.21 1.197
2iq0 NAPAldose reductase 1.1.1.21 1.194
1x96 NAPAldose reductase 1.1.1.21 1.191
4xzn NAPAldo-keto reductase family 1 member B10 1.1.1 1.184
1hqt NAPAlcohol dehydrogenase [NADP(+)] 1.1.1.2 1.155
2acu NAPAldose reductase 1.1.1.21 1.153
2acs NAPAldose reductase 1.1.1.21 1.146
3q65 NAPAldose reductase 1.1.1.21 1.073
4xzm NAPAldo-keto reductase family 1 member B10 1.1.1 1.073
1ef3 NAPAldose reductase 1.1.1.21 1.065
3h7u NAPNADPH-dependent aldo-keto reductase, chloroplastic / 1.056
2bgs NDPAldose reductase 1.1.1.21 1.048
3o3r NAPAldose reductase-related protein 1 1.1.1.21 1.046
4pmj NAPPutative oxidoreductase / 1.044
1q5m NDPProstaglandin-E(2) 9-reductase 1.1.1.189 1.029
2pfh NDPAldose reductase 1.1.1.21 1.011
3uzw NAP3-oxo-5-beta-steroid 4-dehydrogenase / 1.008
3h7r NAPAldo-keto reductase family 4 member C8 / 0.998
5c7h NDPPutative oxidoreductase / 0.994
2vdg NDPAldose reductase 1.1.1.21 0.983
4g5d NDPProstaglandin F synthase 1.1.1.188 0.981
3bv7 NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.972
1c9w NAPAldose reductase-related protein 2 / 0.956
1vp5 NAPOxidoreductase, aldo/keto reductase family / 0.955
4jtq NAPAldo-keto reductase family 1 member C2 / 0.936
4l1x NAPAldo-keto reductase family 1 member C2 / 0.922
3caq NDP3-oxo-5-beta-steroid 4-dehydrogenase / 0.908
1s1p NAPAldo-keto reductase family 1 member C3 / 0.897
4xo7 NAPAldo-keto reductase family 1 member C2 / 0.887
1az2 NAPAldose reductase 1.1.1.21 0.883
4jq3 NAPAldo-keto reductase family 1 member C2 / 0.881
1k8c NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.878
3wbw NDPPutative 2,5-diketo-D-gluconic acid reductase / 0.867
1r38 NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.860
2hdj NDPAldo-keto reductase family 1 member C2 / 0.854
3wcz NAPAldo-keto reductase AKR2E4 / 0.850
1a80 NDP2,5-diketo-D-gluconic acid reductase A 1.1.1.346 0.843
4dz5 NAPAldo-keto reductase family 1 member C3 / 0.826
4ijr NDPD-arabinose dehydrogenase [NAD(P)+] heavy chain 1.1.1.117 0.822
2fvl NAPAldo-keto reductase family 1 member C4 1.1.1.225 0.812
1s1r NAPAldo-keto reductase family 1 member C3 / 0.806
3ln3 NADAldo-keto reductase family 1 member C13 / 0.801
3buv NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.790
1ye4 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.772
3dop NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.758
1zgd NAPChalcone reductase / 0.755
3g1r NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.749
1mi3 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.728
1m9h NAD2,5-diketo-D-gluconic acid reductase A 1.1.1.346 0.725
1ye6 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.706
1z9a NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.699
4jta NAPVoltage-gated potassium channel subunit beta-2 / 0.699
2clp NDPAflatoxin B1 aldehyde reductase member 3 / 0.698
1ye6 NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.690
1sm9 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.681
1lqa NDPProtein tas / 0.677
1pz0 NAPProtein IolS 1.1.1 0.670
2hej NDPAldo-keto reductase family 1 member C21 1.1.1 0.665
2p5n NDPAldo-keto reductase family 1 member C21 1.1.1 0.660
2c91 NAPAflatoxin B1 aldehyde reductase member 2 / 0.653