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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qiy QI1 Botulinum neurotoxin type A 3.4.24.69

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qiy QI1Botulinum neurotoxin type A 3.4.24.69 0.944
2puc GUNHTH-type transcriptional repressor PurR / 0.694
1wet GUNHTH-type transcriptional repressor PurR / 0.669
2puf GUNHTH-type transcriptional repressor PurR / 0.651
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.650