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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qi1 C6A Beta-secretase 1 3.4.23.46

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qi1 C6ABeta-secretase 1 3.4.23.46 1.335
4exg 916Beta-secretase 1 3.4.23.46 1.032
4ke0 1R8Beta-secretase 1 3.4.23.46 1.024
3nsh 957Beta-secretase 1 3.4.23.46 1.018
4i0i 957Beta-secretase 1 3.4.23.46 1.018
4dus 0MPBeta-secretase 1 3.4.23.46 1.005
4i0h 1BLBeta-secretase 1 3.4.23.46 0.994
4ewo 996Beta-secretase 1 3.4.23.46 0.981
4k8s 1QTBeta-secretase 1 3.4.23.46 0.936
4ke1 1R6Beta-secretase 1 3.4.23.46 0.922
3k5c 0BIBeta-secretase 1 3.4.23.46 0.903
3cib 314Beta-secretase 1 3.4.23.46 0.896
2p83 MR0Beta-secretase 1 3.4.23.46 0.882
3lpk Z76Beta-secretase 1 3.4.23.46 0.870
2vij C44Beta-secretase 1 3.4.23.46 0.869
3cic 316Beta-secretase 1 3.4.23.46 0.868
2vnm CM8Beta-secretase 1 3.4.23.46 0.867
3lpi Z74Beta-secretase 1 3.4.23.46 0.866
2wf0 ZY0Beta-secretase 1 3.4.23.46 0.863
2vj7 VG6Beta-secretase 1 3.4.23.46 0.862
3r2f PB0Beta-secretase 1 3.4.23.46 0.861
2wf1 ZY1Beta-secretase 1 3.4.23.46 0.856
2xfj VG5Beta-secretase 1 3.4.23.46 0.853
3veu 0GOBeta-secretase 1 3.4.23.46 0.850
2xfi XFIBeta-secretase 1 3.4.23.46 0.848
2vnn CM7Beta-secretase 1 3.4.23.46 0.843
2viy VG3Beta-secretase 1 3.4.23.46 0.839
3ohh 3HHBeta-secretase 1 3.4.23.46 0.837
2xfk AA9Beta-secretase 1 3.4.23.46 0.832
3cid 318Beta-secretase 1 3.4.23.46 0.832
4i0j 842Beta-secretase 1 3.4.23.46 0.831
2p8h MY9Beta-secretase 1 3.4.23.46 0.830
2vie VG0Beta-secretase 1 3.4.23.46 0.826
2wf2 ZY2Beta-secretase 1 3.4.23.46 0.822
2wf3 ZY3Beta-secretase 1 3.4.23.46 0.817
4fco 0U4Beta-secretase 1 3.4.23.46 0.812
2wez ZYEBeta-secretase 1 3.4.23.46 0.811
2viz VG4Beta-secretase 1 3.4.23.46 0.806
4lxk 1YTBeta-secretase 1 3.4.23.46 0.801
3n4l 842Beta-secretase 1 3.4.23.46 0.794
4lxm 1YUBeta-secretase 1 3.4.23.46 0.790
3pi5 3P5Beta-secretase 1 3.4.23.46 0.785
2b8v 3BNBeta-secretase 1 3.4.23.46 0.775
4lxa 1YSBeta-secretase 1 3.4.23.46 0.770
3pww ROCEndothiapepsin 3.4.23.22 0.764
3dm6 757Beta-secretase 1 3.4.23.46 0.758
3vf3 0GSBeta-secretase 1 3.4.23.46 0.753
2b8l 5HABeta-secretase 1 3.4.23.46 0.752
3i25 MV7Beta-secretase 1 3.4.23.46 0.746
4e5i 0N9Polymerase acidic protein / 0.744
3lpj Z75Beta-secretase 1 3.4.23.46 0.742
3ixj 586Beta-secretase 1 3.4.23.46 0.739
3qbh QBHBeta-secretase 1 3.4.23.46 0.737
2wf4 ZY4Beta-secretase 1 3.4.23.46 0.734
3vg1 0GTBeta-secretase 1 3.4.23.46 0.717
1e80 0GQEndothiapepsin 3.4.23.22 0.702
1b6p PI7Gag-Pol polyprotein 3.4.23.16 0.680
2f3e AXQBeta-secretase 1 3.4.23.46 0.677
1w51 L01Beta-secretase 1 3.4.23.46 0.672
3own 3OXRenin 3.4.23.15 0.672
1b6k PI5Gag-Pol polyprotein 3.4.23.16 0.671
3dv5 BAVBeta-secretase 1 3.4.23.46 0.670
2hiz LIJBeta-secretase 1 3.4.23.46 0.666
2qzl IXSBeta-secretase 1 3.4.23.46 0.664
1bil 0IURenin 3.4.23.15 0.662
1zsf 0ZSGag-Pol polyprotein 3.4.23.16 0.662
4e5f 0N7Polymerase acidic protein / 0.660
4k9h 1QUBeta-secretase 1 3.4.23.46 0.659
1yhs STUSerine/threonine-protein kinase pim-1 2.7.11.1 0.652
4dh6 0KNBeta-secretase 1 3.4.23.46 0.651