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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qgd 23E Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qgd 23EGenome polyprotein 2.7.7.48 1.211
3q0z 23EGenome polyprotein 2.7.7.48 1.152
3qgf 23EGenome polyprotein 2.7.7.48 1.114
3qge 23EGenome polyprotein 2.7.7.48 1.049
2dxs JTPGenome polyprotein 2.7.7.48 0.915
4dru 0LNGenome polyprotein 2.7.7.48 0.830
2brl POOGenome polyprotein 2.7.7.48 0.749
2xwy IB8Genome polyprotein 2.7.7.48 0.722
3mww BIWGenome polyprotein 2.7.7.48 0.721