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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qcm NXW Receptor-type tyrosine-protein phosphatase gamma 3.1.3.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qcm NXWReceptor-type tyrosine-protein phosphatase gamma 3.1.3.48 1.380
3qcl NXVReceptor-type tyrosine-protein phosphatase gamma 3.1.3.48 1.010
3qck NX5Receptor-type tyrosine-protein phosphatase gamma 3.1.3.48 0.945
3qcj NX4Receptor-type tyrosine-protein phosphatase gamma 3.1.3.48 0.792
3qcf NXYReceptor-type tyrosine-protein phosphatase gamma 3.1.3.48 0.780
3qce NXYReceptor-type tyrosine-protein phosphatase gamma 3.1.3.48 0.769
3qci NX3Receptor-type tyrosine-protein phosphatase gamma 3.1.3.48 0.758
3qch NX2Receptor-type tyrosine-protein phosphatase gamma 3.1.3.48 0.742