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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3qci NX3 Receptor-type tyrosine-protein phosphatase gamma 3.1.3.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3qci NX3Receptor-type tyrosine-protein phosphatase gamma 3.1.3.48 1.191
3qcl NXVReceptor-type tyrosine-protein phosphatase gamma 3.1.3.48 0.914
3qcj NX4Receptor-type tyrosine-protein phosphatase gamma 3.1.3.48 0.897
3qch NX2Receptor-type tyrosine-protein phosphatase gamma 3.1.3.48 0.783
3qck NX5Receptor-type tyrosine-protein phosphatase gamma 3.1.3.48 0.783
3qcm NXWReceptor-type tyrosine-protein phosphatase gamma 3.1.3.48 0.758
3qcf NXYReceptor-type tyrosine-protein phosphatase gamma 3.1.3.48 0.722
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1nq1 4HYThyroid hormone receptor beta / 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2puc GUNHTH-type transcriptional repressor PurR / 0.660
4e5i 0N9Polymerase acidic protein / 0.660
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.660
2xiy XIYSerine/threonine-protein kinase pim-1 2.7.11.1 0.658
3zlo X8UBcl-2-like protein 1 / 0.655
1pmn 984Mitogen-activated protein kinase 10 2.7.11.24 0.654