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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3q9z TXQ Casein kinase II subunit alpha 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3q9z TXQCasein kinase II subunit alpha 2.7.11.1 0.944
3q9y TXQCasein kinase II subunit alpha 2.7.11.1 0.800
3c13 EMOCasein kinase II subunit alpha 2.7.11.1 0.788
1m2p HNACasein kinase II subunit alpha 2.7.11.1 0.781
3fl5 TXQCasein kinase II subunit alpha 2.7.11.1 0.739
3q9x EMOCasein kinase II subunit alpha 2.7.11.1 0.699
3qzg X67Cyclin-dependent kinase 2 2.7.11.22 0.679
2wbg LGSBeta-glucosidase A 3.2.1.21 0.674
3bqc EMOCasein kinase II subunit alpha 2.7.11.1 0.673
3qqh X0ACyclin-dependent kinase 2 2.7.11.22 0.667
3q9w EMOCasein kinase II subunit alpha 2.7.11.1 0.666
2o0u C0MMitogen-activated protein kinase 10 2.7.11.24 0.662
3qzf X66Cyclin-dependent kinase 2 2.7.11.22 0.661
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4e5i 0N9Polymerase acidic protein / 0.660
3r1s X73Cyclin-dependent kinase 2 2.7.11.22 0.659
3qqg X06Cyclin-dependent kinase 2 2.7.11.22 0.658
4e5l DBHPolymerase acidic protein / 0.658
3ti1 B49Cyclin-dependent kinase 2 2.7.11.22 0.656