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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3q9w EMO Casein kinase II subunit alpha 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3q9w EMOCasein kinase II subunit alpha 2.7.11.1 0.964
3q9x EMOCasein kinase II subunit alpha 2.7.11.1 0.922
3bqc EMOCasein kinase II subunit alpha 2.7.11.1 0.915
3c13 EMOCasein kinase II subunit alpha 2.7.11.1 0.900
4dgm AGICasein kinase II subunit alpha 2.7.11.1 0.783
3q9y TXQCasein kinase II subunit alpha 2.7.11.1 0.775
1f0q EMOCasein kinase II subunit alpha 2.7.11.1 0.724
1m2p HNACasein kinase II subunit alpha 2.7.11.1 0.723
4dgn LU2Casein kinase II subunit alpha 2.7.11.1 0.708
3pe2 E1BCasein kinase II subunit alpha 2.7.11.1 0.695
4dgo 0JWCasein kinase II subunit alpha 2.7.11.1 0.686
3axw TIDCasein kinase II subunit alpha 2.7.11.1 0.685
3fl5 TXQCasein kinase II subunit alpha 2.7.11.1 0.679
2f7e 2EAcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.668
3fzs B96Protein-tyrosine kinase 2-beta 2.7.10.2 0.668
3q9z TXQCasein kinase II subunit alpha 2.7.11.1 0.666
2fum MIXSerine/threonine-protein kinase PknB 2.7.11.1 0.661
5dgz L20Serine/threonine-protein kinase pim-1 2.7.11.1 0.657
2x9f X9FEphrin type-B receptor 4 2.7.10.1 0.653
3f69 XDRSerine/threonine-protein kinase PknB 2.7.11.1 0.651