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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3q6j KPC 2-oxopropyl-CoM reductase, carboxylating 1.8.1.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3q6j KPC2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 1.032
1mo9 KPC2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.953
2c3d COM2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.706
3mw0 BHRNickel-binding periplasmic protein / 0.687
3mz9 BHNNickel-binding periplasmic protein / 0.673
1zm7 TTPDeoxynucleoside kinase / 0.665
1fnd A2PFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.661
5by6 UMPThymidylate synthase / 0.659
3mvz BHNNickel-binding periplasmic protein / 0.657
4isk UMPThymidylate synthase / 0.656
4dxj 0M9Farnesyl pyrophosphate synthase / 0.653
3n0b FADFlavin-dependent thymidylate synthase 2.1.1.148 0.651
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.650