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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3q3b 55E Glycogen synthase kinase-3 beta 2.7.11.26

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3q3b 55EGlycogen synthase kinase-3 beta 2.7.11.26 0.948
1rek B8LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.698
4n0s DHCMitogen-activated protein kinase 1 2.7.11.24 0.691
2obj VRVSerine/threonine-protein kinase pim-1 2.7.11.1 0.685
3qcq 3Q03-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.673
3ql8 X01Cyclin-dependent kinase 2 2.7.11.22 0.667
3qqh X0ACyclin-dependent kinase 2 2.7.11.22 0.661
3fz1 B98Cyclin-dependent kinase 2 2.7.11.22 0.660
3oog YTPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.660
4eh5 0OMMitogen-activated protein kinase 14 / 0.651
4b7t CWTGlycogen synthase kinase-3 beta 2.7.11.26 0.650