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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3q0g BCO Probable enoyl-CoA hydratase echA8 4.2.1.17

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3q0g BCOProbable enoyl-CoA hydratase echA8 4.2.1.17 1.169
1dub CAAEnoyl-CoA hydratase, mitochondrial 4.2.1.17 0.857
1mj3 HXCEnoyl-CoA hydratase, mitochondrial 4.2.1.17 0.779
3q0j CAAProbable enoyl-CoA hydratase echA8 4.2.1.17 0.772
1ey3 DAKEnoyl-CoA hydratase, mitochondrial 4.2.1.17 0.747
5aaj HSCPeroxisomal bifunctional enzyme 1.1.1.35 0.712
2dub CO8Enoyl-CoA hydratase, mitochondrial 4.2.1.17 0.700
3q0g COAProbable enoyl-CoA hydratase echA8 4.2.1.17 0.694
4i4z 2NE1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.678
1q51 CAA1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.670
4i42 1HA1,4-dihydroxy-2-naphthoyl-CoA synthase / 0.650