Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3pz4 3PZ Protein farnesyltransferase subunit beta 2.5.1.58

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3pz4 3PZProtein farnesyltransferase subunit beta 2.5.1.58 0.796
4gtm 7TMProtein farnesyltransferase subunit beta 2.5.1.58 0.753
1fp6 ADPNitrogenase iron protein 1 1.18.6.1 0.744
2bri ANPUridylate kinase 2.7.4.22 0.744
2xi3 GTPGenome polyprotein 2.7.7.48 0.744
3fwy ADPLight-independent protochlorophyllide reductase iron-sulfur ATP-binding protein / 0.744
3mle ADPATP-dependent dethiobiotin synthetase BioD 6.3.3.3 0.744
3sop GDPNeuronal-specific septin-3 / 0.744
4jjz ADPFormate--tetrahydrofolate ligase / 0.744
4ldj GDPGTPase KRas / 0.744
4obe GDPGTPase KRas / 0.744
4y8v ADPAcyl-CoA synthetase (NDP forming) / 0.744
4yqf GDPSeptin-9 / 0.744
4z17 PEPEnolase / 0.744
4z54 GDPNeuronal-specific septin-3 / 0.744
1sa5 BMVProtein farnesyltransferase subunit beta 2.5.1.58 0.741
4gtr 7TRProtein farnesyltransferase subunit beta 2.5.1.58 0.709
3pz2 3PZGeranylgeranyl transferase type-2 subunit beta 2.5.1.60 0.684
4gtv 7TRGeranylgeranyl transferase type-2 subunit beta 2.5.1.60 0.674
4gts 7TPGeranylgeranyl transferase type-2 subunit beta 2.5.1.60 0.667
1esn ANPPantothenate kinase 2.7.1.33 0.660
1f5n GNPGuanylate-binding protein 1 / 0.660
1gx1 CDP2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.660
1ky2 GNPGTP-binding protein YPT7 / 0.660
1svw GTPProbable GTP-binding protein EngB / 0.660
1wdt GTPElongation factor G (EF-G-2) / 0.660
2xtn GTPGTPase IMAP family member 2 / 0.660
3ftq GNPSeptin-2 / 0.660
3tjz GNPADP-ribosylation factor 1 / 0.660
4hdq GNPRas-related protein Rap-1b / 0.660
4hut ATPCob(I)yrinic acid a,c-diamide adenosyltransferase 2.5.1.17 0.660
4gtp 7TPProtein farnesyltransferase subunit beta 2.5.1.58 0.659