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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3pxv FMN Nitroreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3pxv FMNNitroreductase / 1.233
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.906
3koq FMNPutative nitroreductase / 0.893
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.892
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.888
2wzv FMNNitroreductase NfnB / 0.887
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.886
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.882
2wzw FMNNitroreductase NfnB / 0.872
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.866
3x22 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.856
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 0.853
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.850
1ooq FMNOxygen-insensitive NAD(P)H nitroreductase / 0.849
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 0.840
3ge6 FMNNitroreductase / 0.840
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 0.831
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.830
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.829
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.827
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 0.810
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.810
3x21 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.803
3e39 FMNNitroreductase / 0.802
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.780
3eo8 FMNPutative nitroreductase / 0.759
3hj9 FMNUncharacterized protein / 0.754
4qly FMNEnone reductase CLA-ER / 0.751
2fre FMNNAD(P)H-flavin oxidoreductase / 0.750
3of4 FMNNitroreductase / 0.746
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.729
4ttc FMNIodotyrosine deiodinase 1 / 0.728
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.727
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.719
4ttb FMNIodotyrosine deiodinase 1 / 0.714
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.708
2bkj FMNNADPH-flavin oxidoreductase / 0.703
2ifa FMNUncharacterized protein / 0.703
4xoo FMNCoenzyme F420:L-glutamate ligase / 0.700
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 0.698
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.697
2hay FMNPutative NAD(P)H-flavin oxidoreductase / 0.693
1usc FMNMonooxygenase / 0.682
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.682
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.676
3oib FDAPutative acyl-CoA dehydrogenase / 0.675
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.670
2pg0 FADAcyl-CoA dehydrogenase / 0.666
2eba FADPutative glutaryl-CoA dehydrogenase / 0.665
3to0 FMNIodotyrosine deiodinase 1 1.21.1.1 0.664
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.662
5cho FADFlavin reductase / 0.661
2yqu FADDihydrolipoyl dehydrogenase / 0.660
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.659
3p4t FAOPutative acyl-CoA dehydrogenase / 0.657
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.655
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.654
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.652