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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3pvt 3HC 1,2-phenylacetyl-CoA epoxidase, subunit A 1.14.13.149

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3pvt 3HC1,2-phenylacetyl-CoA epoxidase, subunit A 1.14.13.149 1.470
3pw1 FAQ1,2-phenylacetyl-CoA epoxidase, subunit A 1.14.13.149 1.220
3pvr BYC1,2-phenylacetyl-CoA epoxidase, subunit A 1.14.13.149 1.168
3pw8 ACO1,2-phenylacetyl-CoA epoxidase, subunit A 1.14.13.149 1.071
4ii4 BYC1,2-phenylacetyl-CoA epoxidase, subunit A 1.14.13.149 0.858
4ylh YE1(3,5-dihydroxyphenyl)acetyl-CoA 1,2-dioxygenase / 0.674