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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3pnf H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.918
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.915
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.913
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.913
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.912
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.912
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.912
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.912
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.912
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.911
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.911
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.910
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.909
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.909
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.909
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.909
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.908
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.908
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.908
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.908
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.908
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.907
3png H4BNitric oxide synthase, brain 1.14.13.39 0.906
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.906
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.905
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.904
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.904
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.904
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.903
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.902
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.902
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.901
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.901
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.899
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.898
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.895
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.892
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.892
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.892
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.891
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.891
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.891
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.891
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.890
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.890
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.890
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.890
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.890
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.889
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.889
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.889
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.889
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.888
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.888
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.888
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.888
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.888
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.887
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.887
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.886
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.886
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.886
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.885
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.885
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.884
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.884
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.884
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.884
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.884
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.883
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.882
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.880
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.879
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.876
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.875
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.875
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.874
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.873
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.872
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.871
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.869
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.867
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.867
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.866
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.866
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.864
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.860
1rs7 H4BNitric oxide synthase, brain 1.14.13.39 0.857
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.856
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.851
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.849
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.849
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.846
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.837
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.832
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.828
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.825
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.823
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.816
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.814
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.808
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.799
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.793
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.778
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.778
4e5i 0N9Polymerase acidic protein / 0.744
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.739
1qw5 H4BNitric oxide synthase, inducible 1.14.13.39 0.724
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.723
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.721
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.714
2y37 H4BNitric oxide synthase, inducible 1.14.13.39 0.709
3dwj H4BNitric oxide synthase, inducible 1.14.13.39 0.709
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.680
1r35 H4BNitric oxide synthase, inducible 1.14.13.39 0.677
1m8e H4BNitric oxide synthase, inducible 1.14.13.39 0.674
4uga H4BNitric oxide synthase oxygenase 1.14.13.165 0.664
4e5f 0N7Polymerase acidic protein / 0.660
4ug7 H4BNitric oxide synthase oxygenase 1.14.13.165 0.657
3ej8 H4BNitric oxide synthase, inducible 1.14.13.39 0.652
3e67 H4BNitric oxide synthase, inducible 1.14.13.39 0.651
4gvq N4MMethenyltetrahydromethanopterin cyclohydrolase 3.5.4.27 0.651