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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3pgp ACO Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3pgp ACOUncharacterized protein / 1.284
4kub COAUncharacterized protein / 1.112
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.897
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.869
2x7b COAN-alpha-acetyltransferase 2.3.1 0.866
1qsm ACOHistone acetyltransferase HPA2 / 0.865
3mgd ACOPredicted acetyltransferase / 0.855
1ghe ACOAcetyltransferase 2.3.1 0.840
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.824
3te4 ACODopamine N-acetyltransferase / 0.823
4r3k COAN-alpha-acetyltransferase 2.3.1 0.822
2vbq BSJAminoglycoside N(6')-acetyltransferase type 1 / 0.817
2r8v ACOAmino-acid acetyltransferase / 0.816
2bsw CAOProbable acetyltransferase / 0.814
4ava ACOAcetyltransferase Pat 2.3.1 0.811
1j4j ACOAcetyltransferase 2.3.1 0.807
4cs0 ACOPanD regulatory factor / 0.807
1wwz ACOUncharacterized protein / 0.804
4qvt ACOAcetyltransferase YpeA 2.3.1 0.802
2jdd ACOProbable acetyltransferase / 0.798
4kvx ACON-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.793
1m4i COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.790
2jdc CAOProbable acetyltransferase / 0.784
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.779
3exn ACOProbable acetyltransferase / 0.775
3r1k COAN-acetyltransferase Eis / 0.773
2cns ACORibosomal-protein-alanine acetyltransferase / 0.770
4u9v ACON-alpha-acetyltransferase 40 2.3.1 0.764
2cy2 ACOProbable acetyltransferase / 0.763
1n71 COAAac(6')-Ii protein / 0.761
4jwp ACOGCN5-related N-acetyltransferase / 0.758
2a4n COAAac(6')-Ii protein / 0.757
5kgj ACOPredicted acetyltransferase / 0.748
5kf8 ACOPredicted acetyltransferase / 0.747
5kf9 ACOPredicted acetyltransferase / 0.743
1kuv CA5Serotonin N-acetyltransferase / 0.739
1ozp ACOMycothiol acetyltransferase 2.3.1.189 0.739
3dr8 ACOL-methionine sulfoximine/L-methionine sulfone acetyltransferase / 0.739
4kvm SER_ALA_SER_GLU_1XEN-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.739
2cnt COARibosomal-protein-alanine acetyltransferase / 0.738
3d2m COAAmino-acid acetyltransferase / 0.737
4b5o ACOAlpha-tubulin N-acetyltransferase 1 / 0.736
5kgh ACOPredicted acetyltransferase / 0.735
4if5 ACOAlpha-tubulin N-acetyltransferase 1 / 0.732
5kf2 ACOPredicted acetyltransferase / 0.731
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.730
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.729
1ib1 COTSerotonin N-acetyltransferase / 0.727
3f8k COAUncharacterized protein / 0.727
4ucn MYAGlycylpeptide N-tetradecanoyltransferase / 0.727
4a31 MYAGlycylpeptide N-tetradecanoyltransferase / 0.725
4u9y COAAlpha-tubulin N-acetyltransferase 1 / 0.725
1mj9 COAHistone acetyltransferase ESA1 / 0.723
4u9z COAAlpha-tubulin N-acetyltransferase 1 / 0.720
4cgp MYAGlycylpeptide N-tetradecanoyltransferase / 0.718
3sxn COAN-acetyltransferase Eis / 0.717
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.716
5c88 COAN-alpha-acetyltransferase / 0.716
3s6f COAUncharacterized protein / 0.715
1p0h COAMycothiol acetyltransferase 2.3.1.189 0.713
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.713
4zm6 ACON-acetyl-beta-D glucosaminidase / 0.713
5a27 MYAGlycylpeptide N-tetradecanoyltransferase / 0.713
1b87 ACOAac(6')-Ii protein / 0.711
5kf8 COAPredicted acetyltransferase / 0.709
5kf2 COAPredicted acetyltransferase / 0.707
5kf1 COAPredicted acetyltransferase / 0.706
4h6u ACOAlpha-tubulin N-acetyltransferase 1 / 0.704
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.703
2ob0 ACON-alpha-acetyltransferase 50 / 0.702
3vwd ACOAlpha-tubulin N-acetyltransferase 1 / 0.701
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 0.701
4b5p ACOAlpha-tubulin N-acetyltransferase 1 / 0.701
4xpd ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.699
1pu9 COAHAT A1 / 0.696
1z4r ACOHistone acetyltransferase KAT2A 2.3.1.48 0.696
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 0.695
4b11 NHWGlycylpeptide N-tetradecanoyltransferase / 0.693
4a32 MYAGlycylpeptide N-tetradecanoyltransferase / 0.685
4bbh NHWGlycylpeptide N-tetradecanoyltransferase / 0.683
5a28 MYAGlycylpeptide N-tetradecanoyltransferase / 0.682
2ozg COAGCN5-related N-acetyltransferase / 0.681
5kgp ACOPredicted acetyltransferase / 0.678
1l0c COTSerotonin N-acetyltransferase / 0.677
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.677
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.675
5ag7 MYAGlycylpeptide N-tetradecanoyltransferase / 0.672
1m1d LYXHAT A1 / 0.670
1bo4 COAAminoglycoside-(3)-N-acetyltransferase / 0.669
2vxk COAGlucosamine 6-phosphate acetyltransferase, putative / 0.669
1qsn COAHAT A1 / 0.668
1qsr ACOHAT A1 / 0.668
2rc4 ACOHistone acetyltransferase KAT6A / 0.667
5kf1 ACOPredicted acetyltransferase / 0.666
1mja COAHistone acetyltransferase ESA1 / 0.664
2zw4 COABleomycin acetyltransferase / 0.664
3bj7 COADiamine acetyltransferase 1 / 0.664
4jxr ACOAcetyltransferase / 0.664
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.662
2y0m ACOHistone acetyltransferase KAT8 / 0.658
3zj0 ACOPutative acetyltransferase OgpAT / 0.658
1pua COAHAT A1 / 0.656
2zfn ACOHistone acetyltransferase RTT109 2.3.1.48 0.656
1s3z COAAminoglycoside N(6')-acetyltransferase type 1 / 0.655
4mxe ACON-acetyltransferase ESCO1 2.3.1 0.655
5h84 1VUHistone acetyltransferase KAT2A 2.3.1.48 0.654
1cjw COTSerotonin N-acetyltransferase / 0.653
2ozu ACOHistone acetyltransferase KAT6A / 0.653
4ua3 COAN-alpha-acetyltransferase 40 2.3.1 0.653
2giv ACOHistone acetyltransferase KAT8 / 0.652
3gy9 COAGCN5-related N-acetyltransferase / 0.651