sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.972 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.792 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.786 | |
| 4jlo | ADP | Adenylate kinase | / | 0.777 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.776 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.773 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.771 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.768 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.765 | |
| 5bn3 | ADP | NEQ263 | / | 0.765 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.759 | |
| 2fna | ADP | Uncharacterized protein | / | 0.759 | |
| 4ike | ADP | Adenylate kinase | / | 0.759 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.758 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.758 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.756 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.756 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.755 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.754 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.748 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.744 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.743 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.743 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.742 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.742 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.742 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.742 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.742 | |
| 1j7k | ATP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.740 | |
| 3d8b | ADP | Fidgetin-like protein 1 | 3.6.4 | 0.740 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.739 | |
| 4jld | ADP | Adenylate kinase | / | 0.739 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.739 | |
| 2jj1 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.738 | |
| 2jj1 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.738 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.738 | |
| 4jky | ADP | Adenylate kinase | / | 0.737 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.735 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.734 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.733 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.733 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.733 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.732 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.732 | |
| 2rgx | AP5 | Adenylate kinase | / | 0.732 | |
| 1zio | AP5 | Adenylate kinase | / | 0.731 | |
| 4qbg | AP5 | Adenylate kinase | / | 0.731 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.729 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.729 | |
| 3fmo | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.729 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.728 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.727 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.726 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.726 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.725 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.724 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.724 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.723 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.723 | |
| 2o8b | ADP | DNA mismatch repair protein Msh2 | / | 0.723 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.723 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.722 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.721 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.721 | |
| 2c98 | ADP | Psp operon transcriptional activator | / | 0.721 | |
| 5da9 | AGS | Uncharacterized protein | / | 0.721 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.720 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.720 | |
| 1e32 | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.719 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 0.719 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.719 | |
| 4tla | ADP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.718 | |
| 5ftc | ADP | TPR domain protein | / | 0.718 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.718 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.717 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.715 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.715 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.715 | |
| 2zrj | AGS | Protein RecA | / | 0.715 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.715 | |
| 3ieu | GDP | GTPase Era | / | 0.714 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.714 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.712 | |
| 4obe | GDP | GTPase KRas | / | 0.712 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.712 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.711 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.711 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.711 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.711 | |
| 4ymu | ATP | ABC-type polar amino acid transport system, ATPase component | / | 0.711 | |
| 1s3s | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.710 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.709 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.709 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.708 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.708 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.708 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.707 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.707 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.707 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.707 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.707 | |
| 1ank | ANP | Adenylate kinase | / | 0.706 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.706 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.706 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.706 | |
| 4ldj | GDP | GTPase KRas | / | 0.706 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.705 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.705 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.705 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.705 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.705 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.705 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.705 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.705 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.705 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.705 | |
| 4zca | ADP | Kinesin-like protein KIF11 | / | 0.705 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.704 | |
| 2ce7 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.704 | |
| 2eck | ADP | Adenylate kinase | / | 0.704 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.704 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.704 | |
| 4lpk | GDP | GTPase KRas | / | 0.704 | |
| 4xgu | ADP | Putative pachytene checkpoint protein 2 | / | 0.704 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.703 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.703 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.702 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.702 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.702 | |
| 4l9s | GDP | GTPase HRas | / | 0.702 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.701 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.701 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.700 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.700 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.700 | |
| 2cl6 | CAG | GTPase HRas | / | 0.700 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.700 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.700 | |
| 4q03 | GDP | GTPase KRas | / | 0.700 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.699 | |
| 4ihq | ADP | Conserved Archaeal protein | / | 0.699 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.699 | |
| 4ql3 | GDP | GTPase KRas | / | 0.699 | |
| 5dac | AGS | Uncharacterized protein | / | 0.699 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.698 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.698 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.697 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.697 | |
| 4yqf | GDP | Septin-9 | / | 0.697 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.696 | |
| 4b7b | ADP | Kinesin-like protein KIF11 | / | 0.696 | |
| 4dsu | GDP | GTPase KRas | / | 0.696 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.696 | |
| 4wa7 | GDP | GTPase KRas | / | 0.696 | |
| 1g6o | ADP | Cag alpha | / | 0.695 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.695 | |
| 1e4y | AP5 | Adenylate kinase | / | 0.694 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.694 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.694 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 0.694 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.694 | |
| 4mkf | AP5 | Adenylate kinase | / | 0.694 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.694 | |
| 1w7i | ADP | Unconventional myosin-Va | / | 0.693 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.693 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.693 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.692 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.692 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.692 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.692 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.692 | |
| 2c5l | GTP | GTPase HRas | / | 0.691 | |
| 3dzd | ADP | Transcriptional regulator (NtrC family) | / | 0.691 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.691 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.691 | |
| 4ag5 | ADP | Type IV secretory pathway VirB4 components-like protein | / | 0.691 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.691 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.690 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.690 | |
| 4c2u | ANP | DNA helicase | / | 0.690 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.689 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.689 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.688 | |
| 3vtk | ADP | Thymidine kinase | / | 0.688 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.688 | |
| 4mkh | AP5 | Adenylate kinase | / | 0.688 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.687 | |
| 3l1c | ADP | Protein claret segregational | / | 0.687 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.687 | |
| 4l8g | GDP | GTPase KRas | / | 0.687 | |
| 2ce2 | GDP | GTPase HRas | / | 0.686 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.686 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.685 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.685 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.685 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.685 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.685 | |
| 4e07 | ACP | Plasmid partitioning protein ParF | / | 0.685 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.685 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.684 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.684 | |
| 2aky | AP5 | Adenylate kinase | / | 0.684 | |
| 2dr3 | ADP | UPF0273 protein PH0284 | / | 0.684 | |
| 4epw | GDP | GTPase KRas | / | 0.684 | |
| 4xvq | GNP | GTPase HRas | / | 0.684 | |
| 5ftf | ADP | TPR domain protein | / | 0.684 | |
| 3c41 | ANP | Amino acid ABC transporter | / | 0.683 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.683 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.682 | |
| 1nly | AGS | Cag alpha | / | 0.681 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.681 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.681 | |
| 4ww4 | ADP | RuvB-like helicase | / | 0.681 | |
| 3mle | ADP | ATP-dependent dethiobiotin synthetase BioD | 6.3.3.3 | 0.680 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.680 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.680 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.680 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.679 | |
| 3ref | GDP | Rho family GTPase | / | 0.679 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.679 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.678 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.678 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.678 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.678 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.677 | |
| 1xd9 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.677 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.677 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.677 | |
| 4ww0 | ADP | ATP-dependent zinc metalloprotease FtsH | / | 0.677 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.676 | |
| 5fl3 | ADP | Pili retraction protein PilT | / | 0.676 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.675 | |
| 2qaj | AP5 | Adenylate kinase | / | 0.675 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.674 | |
| 3kjg | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.674 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.674 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.674 | |
| 1njf | ADP | DNA polymerase III subunit tau | 2.7.7.7 | 0.673 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 0.673 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.672 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.672 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.672 | |
| 2y65 | ADP | Kinesin heavy chain | / | 0.672 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.672 | |
| 5cyo | GDP | Septin-9 | / | 0.672 | |
| 1r0z | ATP | Cystic fibrosis transmembrane conductance regulator | / | 0.671 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.671 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.671 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.670 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.670 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.670 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.670 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.670 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.670 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.670 | |
| 1e1q | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.668 | |
| 1e1q | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.668 | |
| 3oes | GNP | GTPase RhebL1 | / | 0.668 | |
| 4dlz | GNP | GTPase HRas | / | 0.668 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.667 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.666 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.666 | |
| 3ftq | GNP | Septin-2 | / | 0.666 | |
| 4wpu | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.666 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 0.665 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.665 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.665 | |
| 3fvq | ATP | Fe(3+) ions import ATP-binding protein FbpC | / | 0.665 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.665 | |
| 4lv6 | GDP | GTPase KRas | / | 0.665 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.664 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.664 | |
| 4q02 | GDP | GTPase KRas | / | 0.664 | |
| 4tq9 | GDP | GTPase KRas | / | 0.664 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.663 | |
| 3kko | GNP | Ras-related protein M-Ras | / | 0.663 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.663 | |
| 4o3m | ADP | Bloom syndrome protein | 3.6.4.12 | 0.662 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.660 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.660 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.660 | |
| 3nbx | ADP | ATPase RavA | 3.6.3 | 0.659 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 0.658 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.658 | |
| 3uk6 | ADP | RuvB-like 2 | 3.6.4.12 | 0.658 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.657 | |
| 1svl | ADP | Large T antigen | 3.6.4 | 0.657 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 0.657 | |
| 4dso | GSP | GTPase KRas | / | 0.657 | |
| 4w5j | AP5 | Adenylate kinase | / | 0.657 | |
| 5bn4 | ANP | V-type ATP synthase alpha chain | / | 0.657 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.656 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 0.656 | |
| 1xkv | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.655 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.655 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.655 | |
| 2rge | GNP | GTPase HRas | / | 0.655 | |
| 2zro | ADP | Protein RecA | / | 0.655 | |
| 3k8y | GNP | GTPase HRas | / | 0.655 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 0.655 | |
| 4dlt | GNP | GTPase HRas | / | 0.655 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 0.655 | |
| 4l9w | GNP | GTPase HRas | / | 0.655 | |
| 4luc | GDP | GTPase KRas | / | 0.655 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.655 | |
| 1im2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.654 | |
| 1s3g | AP5 | Adenylate kinase | / | 0.654 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.654 | |
| 2rgc | GNP | GTPase HRas | / | 0.654 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.654 | |
| 3oiw | GNP | GTPase HRas | / | 0.654 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.654 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.653 | |
| 2q2z | ADP | Kinesin-like protein KIF11 | / | 0.653 | |
| 4dlx | GNP | GTPase HRas | / | 0.653 | |
| 4iei | ADP | Gene 2 protein | / | 0.653 | |
| 4k81 | GTP | GTPase HRas | / | 0.652 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.651 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.651 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.650 | |
| 3lbh | GNP | GTPase HRas | / | 0.650 |