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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3pdt ADP Myosin heavy chain kinase A 2.7.11.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3pdt ADPMyosin heavy chain kinase A 2.7.11.7 0.913
3lla ACPMyosin heavy chain kinase A 2.7.11.7 0.769
2r7n ADP5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase / 0.740
1iah ADPTransient receptor potential cation channel subfamily M member 7 2.7.11.1 0.729
4zme ADNMyosin heavy chain kinase A 2.7.11.7 0.707
4c5c ATPD-alanine--D-alanine ligase B 6.3.2.4 0.705
4fu0 ADPD-alanine--D-alanine ligase / 0.705
3lmi ATPMyosin heavy chain kinase A 2.7.11.7 0.698
4ffl ADPUncharacterized protein / 0.697
2vqd AP2Biotin carboxylase 6.3.4.14 0.690
1ia9 ANPTransient receptor potential cation channel subfamily M member 7 2.7.11.1 0.687
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.687
4nzo ANPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.687
1z2n ADPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.682
1m0w ANPGlutathione synthetase 6.3.2.3 0.681
3lmh ADPMyosin heavy chain kinase A 2.7.11.7 0.681
3vpb ADPGlutamate--LysW ligase ArgX 6.3.2 0.680
4q4c ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.680
3wnz ADPAlanine--anticapsin ligase / 0.679
3r5f ATPD-alanine--D-alanine ligase / 0.677
3g8d ADPBiotin carboxylase 6.3.4.14 0.675
3k5h ATPPhosphoribosyl-aminoimidazole carboxylase / 0.670
4ffr ATPUncharacterized protein / 0.667
4rx6 ATPNitrogen regulatory PII-like protein / 0.662
1z2p ACPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.661
1v3s ATPSignaling protein / 0.660
2i8c ADPD-alanine--D-alanine ligase / 0.657
3t9f ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.656
4ffm ADPUncharacterized protein / 0.656
1jkl ANPDeath-associated protein kinase 1 2.7.11.1 0.655
4c3r ACPAurora kinase A 2.7.11.1 0.653
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.652
2p0a ANPSynapsin-3 / 0.652
2wq7 FADRE11660p / 0.652
5l8j ADPAurora kinase A 2.7.11.1 0.651
3cvu FADRE11660p / 0.650
3tw6 ADPPyruvate carboxylase / 0.650
5c1p ADPD-alanine--D-alanine ligase / 0.650