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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3pd4 A3G Threonine--tRNA ligase 6.1.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3pd4 A3GThreonine--tRNA ligase 6.1.1.3 0.923
4rrr A3TThreonine--tRNA ligase 6.1.1.3 0.792
4rr9 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.784
4rrl A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.784
4rr6 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.782
4rri A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.775
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.764
4rrb A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.761
3pd2 A3SThreonine--tRNA ligase 6.1.1.3 0.756
4rrf A3SThreonine--tRNA ligase 6.1.1.3 0.750
4rrm A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.747
4rrh A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.746
4rrq A3SThreonine--tRNA ligase 6.1.1.3 0.739
4rr7 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.737
4rrj A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.735
4rrg A3TThreonine--tRNA ligase 6.1.1.3 0.730
2hl1 A3SThreonine--tRNA ligase 6.1.1.3 0.726
4rrk A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.723
4rra A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.716
2hl2 SSAThreonine--tRNA ligase 6.1.1.3 0.711
3pd3 A3TThreonine--tRNA ligase 6.1.1.3 0.709
4nbj D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.699
3pd5 TSBThreonine--tRNA ligase 6.1.1.3 0.698
4rrc A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.688
2hl0 A3SThreonine--tRNA ligase 6.1.1.3 0.680
4nbi D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.678
4rrd A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.677
3hu1 AGSTransitional endoplasmic reticulum ATPase 3.6.4.6 0.652