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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3p4t FAO Putative acyl-CoA dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3p4t FAOPutative acyl-CoA dehydrogenase / 1.449
3oib FDAPutative acyl-CoA dehydrogenase / 1.372
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 1.099
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 1.090
4iv6 FDAIsovaleryl-CoA dehydrogenase / 1.082
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 1.061
2pg0 FADAcyl-CoA dehydrogenase / 1.045
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 1.031
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 1.023
3r7k FDAProbable acyl CoA dehydrogenase / 1.006
3sf6 FDAGlutaryl-CoA dehydrogenase / 0.963
5jsc FADPutative acyl-CoA dehydrogenase / 0.950
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.949
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.943
2d29 FADAcyl-CoA dehydrogenase / 0.920
4m9a FDAAcyl-CoA dehydrogenase / 0.917
2eba FADPutative glutaryl-CoA dehydrogenase / 0.903
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.903
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.880
5af7 FADAcyl-CoA dehydrogenase / 0.876
5ahs FADAcyl-CoA dehydrogenase / 0.876
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.875
2a1t FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.871
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.867
1t9g FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.865
2z1q FADAcyl-CoA dehydrogenase / 0.860
1buc FADAcyl-CoA dehydrogenase, short-chain specific 1.3.8.1 0.843
2dvl FADAcyl-CoA dehydrogenase / 0.839
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.821
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.809
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.805
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.800
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.785
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.785
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.780
3owa FADAcyl-CoA dehydrogenase / 0.766
3mkh FADNitroalkane oxidase / 0.747
2fon FADAcyl-coenzyme A oxidase / 0.744
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.741
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.717
2c12 FADNitroalkane oxidase 1.7.3.1 0.706
4ttc FMNIodotyrosine deiodinase 1 / 0.704
2wzw FMNNitroreductase NfnB / 0.702
3ge6 FMNNitroreductase / 0.692
3eo8 FMNPutative nitroreductase / 0.689
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.689
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.689
1u8v FAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase / 0.688
4qly FMNEnone reductase CLA-ER / 0.681
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.680
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.678
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.677
2wzv FMNNitroreductase NfnB / 0.666
3e39 FMNNitroreductase / 0.665
2yyl FAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component 1.14.14.9 0.664
3koq FMNPutative nitroreductase / 0.662
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.661
3hj9 FMNUncharacterized protein / 0.661
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.660
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.660
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.659
3pxv FMNNitroreductase / 0.657
4eer FMNPhototropin-2 2.7.11.1 0.657
4kuk RBFPutative blue-light photoreceptor / 0.654
1jeh FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.652
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.651
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.651
2z6c FMNPhototropin-1 2.7.11.1 0.651