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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3p0g P0G Beta-2 adrenergic receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3p0g P0GBeta-2 adrenergic receptor / 1.251
4lde P0GBeta-2 adrenergic receptor / 0.922
3sn6 P0GBeta-2 adrenergic receptor / 0.850
4ldl XQCBeta-2 adrenergic receptor / 0.794
2y02 WHJBeta-1 adrenergic receptor / 0.739
2vt4 P32Beta-1 adrenergic receptor / 0.735
2y03 5FWBeta-1 adrenergic receptor / 0.722
2rh1 CAUBeta-2 adrenergic receptor / 0.706
5d6l CAUBeta-2 adrenergic receptor / 0.701
2y04 68HBeta-1 adrenergic receptor / 0.694
5a8e XTKBeta-1 adrenergic receptor / 0.689
3nya JTZBeta-2 adrenergic receptor / 0.680
2ycy P32Beta-1 adrenergic receptor / 0.676
3d4s TIMBeta-2 adrenergic receptor / 0.674
4amj CVDBeta-1 adrenergic receptor / 0.662
2ycz I32Beta-1 adrenergic receptor / 0.661
3ny9 JSZBeta-2 adrenergic receptor / 0.659
3vw8 DF6Hepatocyte growth factor receptor 2.7.10.1 0.653
5d5a CAUBeta-2 adrenergic receptor / 0.651