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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3own 3OX Renin 3.4.23.15

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3own 3OXRenin 3.4.23.15 1.345
1bil 0IURenin 3.4.23.15 0.734
1eag A70Candidapepsin-2 3.4.23.24 0.730
4dpf 0LGBeta-secretase 1 3.4.23.46 0.730
2f3e AXQBeta-secretase 1 3.4.23.46 0.723
3ixk 929Beta-secretase 1 3.4.23.46 0.720
3k5g BJCBeta-secretase 1 3.4.23.46 0.720
2g94 ZPQBeta-secretase 1 3.4.23.46 0.716
2jjj 0QSEndothiapepsin 3.4.23.22 0.714
3own 3OWRenin 3.4.23.15 0.712
3k5f AYHBeta-secretase 1 3.4.23.46 0.706
3i25 MV7Beta-secretase 1 3.4.23.46 0.705
1e81 M91Endothiapepsin 3.4.23.22 0.699
2jji 0QSEndothiapepsin 3.4.23.22 0.696
2p4j 23IBeta-secretase 1 3.4.23.46 0.691
2p83 MR0Beta-secretase 1 3.4.23.46 0.690
1rne C60Renin 3.4.23.15 0.688
2wf2 ZY2Beta-secretase 1 3.4.23.46 0.688
1bim 0QBRenin 3.4.23.15 0.687
1e80 0GQEndothiapepsin 3.4.23.22 0.687
2f3f AXFBeta-secretase 1 3.4.23.46 0.687
2vkm BSDBeta-secretase 1 3.4.23.46 0.686
2fdp FRPBeta-secretase 1 3.4.23.46 0.683
4k8s 1QTBeta-secretase 1 3.4.23.46 0.683
3pww ROCEndothiapepsin 3.4.23.22 0.682
2xfi XFIBeta-secretase 1 3.4.23.46 0.677
1od1 0QSEndothiapepsin 3.4.23.22 0.676
1psa 0ZLPepsin A 3.4.23.1 0.675
2xfk AA9Beta-secretase 1 3.4.23.46 0.675
4fco 0U4Beta-secretase 1 3.4.23.46 0.675
2b8v 3BNBeta-secretase 1 3.4.23.46 0.673
3qi1 C6ABeta-secretase 1 3.4.23.46 0.672
2xfj VG5Beta-secretase 1 3.4.23.46 0.670
3nsh 957Beta-secretase 1 3.4.23.46 0.668
4i0i 957Beta-secretase 1 3.4.23.46 0.668
3lpk Z76Beta-secretase 1 3.4.23.46 0.667
1e82 M90Endothiapepsin 3.4.23.22 0.665
2p8h MY9Beta-secretase 1 3.4.23.46 0.661
1w6h TITPlasmepsin-2 3.4.23.39 0.657
2iqg F2IBeta-secretase 1 3.4.23.46 0.657
3cic 316Beta-secretase 1 3.4.23.46 0.654